Genome Meta Information: Corynebacterium afermentans DSM 44280 (GCA_900156035.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900156035.1 | ||
| HOMD Taxon-ID | HMT-0030 | ||
| Species Name (in use by HOMD) | Corynebacterium afermentans | ||
| Organism Name (as deposited) | HMT-030 Corynebacterium afermentans DSM 44280 | ||
| Strain or Isolate | DSM 44280 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium afermentans |
||
| Sequencing Technology | Illumina HiSeq 2500-1TB | ||
| Genome Coverage | 373 | ||
| Contigs |
|
||
| Total Sequence Length | 2,326,687 (bp) | ||
| GC Percentage | 64.85 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/156/035/GCA_900156035.1_IMG-taxon_2681813557_annotated_assembly | ||
| CDS | 2144 | ||
| Genes | 2213 | ||
| mRNA | 2213 | ||
| misc RNA | 8 | ||
| rRNA | 5 | ||
| tRNA | 55 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 97.4 % | ||
| CheckM Contamination | 0.72 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | IMG-taxon 2681813557 annotated |
| GenBank Assembly Accession | GCA_900156035.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900156035.1 [NCBI] |
| BioSample | SAMN05421802 [NCBI] |
| BioProject | PRJEB18848 [NCBI] |
| Submitter | DOE - JOINT GENOME INSTITUTE |
| Submission Date | 2016-07-20T20:53:34.353 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | FTMH01 |
| NCBI TaxID | 38286 |
| Isolation Source | missing |
| Geo Location | missing |
