Genome Meta Information: Janibacter indicus CGMCC 1.12511 (GCA_900176385.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900176385.1 | ||
| HOMD Taxon-ID | HMT-0339 | ||
| Species Name (in use by HOMD) | Janibacter indicus | ||
| Organism Name (as deposited) | HMT-339 Janibacter indicus CGMCC 1.12511 | ||
| Strain or Isolate | CGMCC 1.12511 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Dermatophilaceae;g__Janibacter; s__Janibacter indicus |
||
| Sequencing Technology | Illumina HiSeq 2500-1TB | ||
| Genome Coverage | 260 | ||
| Contigs |
|
||
| Total Sequence Length | 3,419,539 (bp) | ||
| GC Percentage | 71.24 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/176/385/GCA_900176385.1_IMG-taxon_2718217638_annotated_assembly | ||
| CDS | 3298 | ||
| Genes | 3374 | ||
| mRNA | 3374 | ||
| misc RNA | 22 | ||
| rRNA | 3 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 93.66 % | ||
| CheckM Contamination | 6.56 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | IMG-taxon 2718217638 annotated |
| GenBank Assembly Accession | GCA_900176385.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900176385.1 [NCBI] |
| BioSample | SAMN06296429 [NCBI] |
| BioProject | PRJEB20331 [NCBI] |
| Submitter | DOE - JOINT GENOME INSTITUTE |
| Submission Date | 2017-02-03T21:31:07.813 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | FWXN01 |
| NCBI TaxID | 857417 |
| Isolation Source | missing |
| Geo Location | missing |
