Genome Meta Information: Haemophilus aegyptius PTHi-10983 (GCA_900407385.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900407385.1 | ||
| HOMD Taxon-ID | HMT-0535 | ||
| Species Name (in use by HOMD) | Haemophilus aegyptius | ||
| Organism Name (as deposited) | HMT-535 Haemophilus aegyptius PTHi-10983 | ||
| Strain or Isolate | PTHi-10983 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus; s__Haemophilus influenzae |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 37 | ||
| Contigs |
|
||
| Total Sequence Length | 1,826,166 (bp) | ||
| GC Percentage | 37.94 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/407/385/GCA_900407385.1_PTHi-10983 | ||
| CDS | 1731 | ||
| Genes | 1826 | ||
| mRNA | 1826 | ||
| misc RNA | 33 | ||
| rRNA | 10 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.43 % | ||
| CheckM Completeness | 99.34 % | ||
| CheckM Contamination | 0.02 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | PTHi-10983 |
| GenBank Assembly Accession | GCA_900407385.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900407385.1 [NCBI] |
| BioSample | SAMEA4643468 [NCBI] |
| BioProject | PRJEB26586 [NCBI] |
| Submitter | NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE |
| Submission Date | 2018-07-03T16:46:41.446 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | UETX01 |
| NCBI TaxID | 727 |
| Isolation Source | CSF |
| Geo Location | Portugal |
