Genome Meta Information: Aggregatibacter aphrophilus NCTC5908 (GCA_900445195.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900445195.1 | ||
| HOMD Taxon-ID | HMT-545 | ||
| Species Name (in use by HOMD) | Aggregatibacter aphrophilus | ||
| Organism Name (as deposited) | HMT-545 Aggregatibacter aphrophilus NCTC5908 | ||
| Strain or Isolate | NCTC5908 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter aphrophilus |
||
| Sequencing Technology | |||
| Genome Coverage | 100.0x | ||
| Contigs |
|
||
| Total Sequence Length | 2,332,869 (bp) | ||
| GC Percentage | 42.37 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/445/195/GCA_900445195.1_52313_B01 | ||
| CDS | 2659 | ||
| Genes | 2802 | ||
| mRNA | 2802 | ||
| misc RNA | 58 | ||
| rRNA | 25 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.92 % | ||
| CheckM Completeness | 97.04 % | ||
| CheckM Contamination | 0.44 % | ||
| CheckM2 Completeness | 93.22 % | ||
| CheckM2 Contamination | 3.27 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 52313_B01 |
| GenBank Assembly Accession | GCA_900445195.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900445195.1 [NCBI] |
| BioSample | SAMEA4552887 [NCBI] |
| BioProject | PRJEB6403 [NCBI] |
| Submitter | SC |
| Submission Date | 2017-05-05T08:08:07.746 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | UFSP01 |
| NCBI TaxID | 732 |
| Isolation Source | not available: to be reported later |
| Geo Location | United Kingdom: London |
