Genome Meta Information: Capnocytophaga ochracea NCTC11546 (GCA_900446705.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900446705.1 | ||
| HOMD Taxon-ID | HMT-0700 | ||
| Species Name (in use by HOMD) | Capnocytophaga ochracea | ||
| Organism Name (as deposited) | HMT-700 Capnocytophaga ochracea NCTC11546 | ||
| Strain or Isolate | NCTC11546 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga; s__Capnocytophaga ochracea |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,946,791 (bp) | ||
| GC Percentage | 39.27 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/446/705/GCA_900446705.1_57572_F01 | ||
| CDS | 2612 | ||
| Genes | 2684 | ||
| mRNA | 2684 | ||
| misc RNA | 10 | ||
| rRNA | 14 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.35 % | ||
| CheckM Completeness | 94.56 % | ||
| CheckM Contamination | 4.74 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 57572_F01 |
| GenBank Assembly Accession | GCA_900446705.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900446705.1 [NCBI] |
| BioSample | SAMEA104210786 [NCBI] |
| BioProject | PRJEB6403 [NCBI] |
| Submitter | SC |
| Submission Date | 2018-01-10T08:06:10.360 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | UARG01 |
| NCBI TaxID | 1018 |
| Isolation Source | not available: to be reported later |
| Geo Location | |
