Genome Meta Information: Haemophilus parainfluenzae NCTC10672 (GCA_900450995.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900450995.1 | ||
| HOMD Taxon-ID | HMT-0718 | ||
| Species Name (in use by HOMD) | Haemophilus parainfluenzae | ||
| Organism Name (as deposited) | HMT-718 Haemophilus parainfluenzae NCTC10672 | ||
| Strain or Isolate | NCTC10672 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D; s__Haemophilus_D parainfluenzae_O |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,236,386 (bp) | ||
| GC Percentage | 39.6 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/450/995/GCA_900450995.1_33922_D01 | ||
| CDS | 2262 | ||
| Genes | 2409 | ||
| mRNA | 2409 | ||
| misc RNA | 69 | ||
| rRNA | 19 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 93.14 % | ||
| CheckM Completeness | 94.07 % | ||
| CheckM Contamination | 0.67 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 33922_D01 |
| GenBank Assembly Accession | GCA_900450995.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900450995.1 [NCBI] |
| BioSample | SAMEA3207621 [NCBI] |
| BioProject | PRJEB6403 [NCBI] |
| Submitter | SC |
| Submission Date | 2015-02-25T11:25:13.906 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | UGHY01 |
| NCBI TaxID | 729 |
| Isolation Source | not available: to be reported later |
| Geo Location | |
