Genome Meta Information: Veillonella atypica NCTC11830 (GCA_900460235.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900460235.1 | ||
| HOMD Taxon-ID | HMT-0524 | ||
| Species Name (in use by HOMD) | Veillonella atypica | ||
| Organism Name (as deposited) | HMT-524 Veillonella atypica NCTC11830 | ||
| Strain or Isolate | NCTC11830 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella; s__Veillonella atypica |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,107,942 (bp) | ||
| GC Percentage | 39.05 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/460/235/GCA_900460235.1_51485_B02 | ||
| CDS | 1958 | ||
| Genes | 2037 | ||
| mRNA | 2037 | ||
| misc RNA | 19 | ||
| rRNA | 9 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 97.79 % | ||
| CheckM Contamination | 1.95 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 51485_B02 |
| GenBank Assembly Accession | GCA_900460235.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900460235.1 [NCBI] |
| BioSample | SAMEA4475705 [NCBI] |
| BioProject | PRJEB6403 [NCBI] |
| Submitter | SC |
| Submission Date | 2017-03-30T12:15:01.340 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | UHIF01 |
| NCBI TaxID | 39777 |
| Isolation Source | Mouth |
| Geo Location | |
