Genome Meta Information: Yersinia pestis NCTC5923 (GCA_900460465.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900460465.1 | ||
| HOMD Taxon-ID | HMT-0827 | ||
| Species Name (in use by HOMD) | Yersinia pestis | ||
| Organism Name (as deposited) | HMT-827 Yersinia pestis NCTC5923 | ||
| Strain or Isolate | NCTC5923 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia; s__Yersinia pestis |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 4,777,134 (bp) | ||
| GC Percentage | 47.58 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/460/465/GCA_900460465.1_57940_B01 | ||
| CDS | 4284 | ||
| Genes | 4643 | ||
| mRNA | 4643 | ||
| misc RNA | 269 | ||
| rRNA | 19 | ||
| tRNA | 70 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.33 % | ||
| CheckM Contamination | 0.96 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 57940_B01 |
| GenBank Assembly Accession | GCA_900460465.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900460465.1 [NCBI] |
| BioSample | SAMEA104281628 [NCBI] |
| BioProject | PRJEB6403 [NCBI] |
| Submitter | SC |
| Submission Date | 2018-01-26T11:05:29.626 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | UAVH01 |
| NCBI TaxID | 632 |
| Isolation Source | not available: to be reported later |
| Geo Location | |
