Genome Meta Information: Staphylococcus lugdunensis NCTC7990 (GCA_900474705.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900474705.1 | ||
| HOMD Taxon-ID | HMT-0128 | ||
| Species Name (in use by HOMD) | Staphylococcus lugdunensis | ||
| Organism Name (as deposited) | HMT-128 Staphylococcus lugdunensis NCTC7990 | ||
| Strain or Isolate | NCTC7990 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus lugdunensis |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,547,699 (bp) | ||
| GC Percentage | 33.85 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/474/705/GCA_900474705.1_41236_B02 | ||
| CDS | 2360 | ||
| Genes | 2522 | ||
| mRNA | 2522 | ||
| misc RNA | 81 | ||
| rRNA | 19 | ||
| tRNA | 61 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.43 % | ||
| CheckM Completeness | 97.77 % | ||
| CheckM Contamination | 0.38 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 41236_B02 |
| GenBank Assembly Accession | GCA_900474705.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900474705.1 [NCBI] |
| BioSample | SAMEA3518001 [NCBI] |
| BioProject | PRJEB6403 [NCBI] |
| Submitter | SC |
| Submission Date | 2015-11-18T09:08:12.400 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 28035 |
| Isolation Source | Blood Culture |
| Geo Location | United Kingdom: Liverpool |
