Genome Meta Information: Haemophilus influenzae NCTC12194 (GCA_900478325.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900478325.1 | ||
| HOMD Taxon-ID | HMT-0641 | ||
| Species Name (in use by HOMD) | Haemophilus influenzae | ||
| Organism Name (as deposited) | HMT-641 Haemophilus influenzae NCTC12194 | ||
| Strain or Isolate | NCTC12194 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus; s__Haemophilus influenzae |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 180 | ||
| Contigs |
|
||
| Total Sequence Length | 1,915,356 (bp) | ||
| GC Percentage | 38.21 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/478/325/GCA_900478325.1_33962_G01 | ||
| CDS | 1865 | ||
| Genes | 1979 | ||
| mRNA | 1979 | ||
| misc RNA | 34 | ||
| rRNA | 19 | ||
| tRNA | 60 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.05 % | ||
| CheckM Completeness | 97.56 % | ||
| CheckM Contamination | 0.09 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 33962_G01 |
| GenBank Assembly Accession | GCA_900478325.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900478325.1 [NCBI] |
| BioSample | SAMEA3207620 [NCBI] |
| BioProject | PRJEB6403 [NCBI] |
| Submitter | SC |
| Submission Date | 2015-02-25T11:25:13.790 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 727 |
| Isolation Source | nasopharynx |
| Geo Location | Denmark |
