Genome Meta Information: Yersinia pestis NCTC10275 (GCA_900637475.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900637475.1 | ||
| HOMD Taxon-ID | HMT-0827 | ||
| Species Name (in use by HOMD) | Yersinia pestis | ||
| Organism Name (as deposited) | HMT-827 Yersinia pestis NCTC10275 | ||
| Strain or Isolate | NCTC10275 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia; s__Yersinia pestis |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 4,610,200 (bp) | ||
| GC Percentage | 47.54 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/637/475/GCA_900637475.1_51108_B01 | ||
| CDS | 3953 | ||
| Genes | 4302 | ||
| mRNA | 4302 | ||
| misc RNA | 245 | ||
| rRNA | 22 | ||
| tRNA | 81 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 98.57 % | ||
| CheckM Contamination | 0.57 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 51108_B01 |
| GenBank Assembly Accession | GCA_900637475.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900637475.1 [NCBI] |
| BioSample | SAMEA4442458 [NCBI] |
| BioProject | PRJEB6403 [NCBI] |
| Submitter | SC |
| Submission Date | 2017-02-22T11:09:12.603 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 633 |
| Isolation Source | not available: to be reported later |
| Geo Location | |
