Genome Meta Information: Gardnerella vaginalis NCTC10287 (GCA_900637625.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900637625.1 | ||
| HOMD Taxon-ID | HMT-0829 | ||
| Species Name (in use by HOMD) | Gardnerella vaginalis | ||
| Organism Name (as deposited) | HMT-829 Gardnerella vaginalis NCTC10287 | ||
| Strain or Isolate | NCTC10287 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium vaginale |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 1,667,383 (bp) | ||
| GC Percentage | 41.36 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/637/625/GCA_900637625.1_52295_C01 | ||
| CDS | 1263 | ||
| Genes | 1330 | ||
| mRNA | 1330 | ||
| misc RNA | 15 | ||
| rRNA | 6 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.77 % | ||
| CheckM Contamination | 0.05 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 52295_C01 |
| GenBank Assembly Accession | GCA_900637625.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900637625.1 [NCBI] |
| BioSample | SAMEA4535760 [NCBI] |
| BioProject | PRJEB6403 [NCBI] |
| Submitter | SC |
| Submission Date | 2017-05-05T08:08:07.296 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 2702 |
| Isolation Source | Vagina |
| Geo Location | |
