Genome Meta Information: Haemophilus parainfluenzae Haemophilus_parainfluenzae_BgEED17 (GCA_901873375.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_901873375.1 | ||
| HOMD Taxon-ID | HMT-0718 | ||
| Species Name (in use by HOMD) | Haemophilus parainfluenzae | ||
| Organism Name (as deposited) | HMT-718 Haemophilus parainfluenzae Haemophilus_parainfluenzae_BgEED17 | ||
| Strain or Isolate | Haemophilus_parainfluenzae_BgEED17 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D; s__Haemophilus_D parainfluenzae_O |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 42 | ||
| Contigs |
|
||
| Total Sequence Length | 1,943,763 (bp) | ||
| GC Percentage | 39.39 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/873/375/GCA_901873375.1_Haemophilus_parainfluenzae_BgEED17 | ||
| CDS | 1875 | ||
| Genes | 1964 | ||
| mRNA | 1964 | ||
| misc RNA | 37 | ||
| rRNA | 4 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 93.02 % | ||
| CheckM Completeness | 98.6 % | ||
| CheckM Contamination | 0.67 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Haemophilus_parainfluenzae_BgE |
| GenBank Assembly Accession | GCA_901873375.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_901873375.1 [NCBI] |
| BioSample | SAMEA5664362 [NCBI] |
| BioProject | PRJEB32184 [NCBI] |
| Submitter | WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES |
| Submission Date | 2021-02-06T10:37:31.040 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | CABFLI01 |
| NCBI TaxID | 729 |
| Isolation Source | |
| Geo Location | |
