Genome Meta Information: Veillonella atypica Veillonella_atypica_BgEED38 (GCA_901875535.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_901875535.1 | ||
| HOMD Taxon-ID | HMT-0524 | ||
| Species Name (in use by HOMD) | Veillonella atypica | ||
| Organism Name (as deposited) | HMT-524 Veillonella atypica Veillonella_atypica_BgEED38 | ||
| Strain or Isolate | Veillonella_atypica_BgEED38 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella; s__Veillonella atypica |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 49 | ||
| Contigs |
|
||
| Total Sequence Length | 2,078,559 (bp) | ||
| GC Percentage | 38.9 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/901/875/535/GCA_901875535.1_Veillonella_atypica_BgEED38 | ||
| CDS | 1863 | ||
| Genes | 1929 | ||
| mRNA | 1929 | ||
| misc RNA | 22 | ||
| rRNA | 4 | ||
| tRNA | 39 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.53 % | ||
| CheckM Completeness | 97.72 % | ||
| CheckM Contamination | 3.01 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Veillonella_atypica_BgEED38 |
| GenBank Assembly Accession | GCA_901875535.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_901875535.1 [NCBI] |
| BioSample | SAMEA5664382 [NCBI] |
| BioProject | PRJEB32184 [NCBI] |
| Submitter | WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES |
| Submission Date | 2021-02-06T10:37:12.900 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | CABFMO01 |
| NCBI TaxID | 39777 |
| Isolation Source | |
| Geo Location | |
