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Genome Meta Information:
Rothia
mucilaginosa
MGYG-HGUT-00307 (GCA_902461255.1)
| HOMD Genome-ID |
GCA_902461255.1
|
| HOMD Taxon-ID |
HMT-681
|
| Species Name (in use by HOMD) |
Rothia mucilaginosa
|
| Organism Name (as deposited) |
HMT-681 Rothia mucilaginosa clade-681 MGYG-HGUT-00307
|
| Strain or Isolate |
MGYG-HGUT-00307
|
GTDB (V)
Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;
s__Rothia mucilaginosa |
| Sequencing Technology |
|
| Genome Coverage |
10.0x
|
| Contigs |
Number of Contigs: 186
|
[Open
in Genome Viewer]
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Sequence]
[Linkout to
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|
|
| Total Sequence Length |
2,184,222 (bp) |
| GC Percentage |
59.54
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/461/255/GCA_902461255.1_UHGG-TPA_MGYG-HGUT-00307
|
| CDS |
1755
|
| Genes |
1816
|
| mRNA |
1816
|
| misc RNA |
12
|
| rRNA |
3
|
| tRNA |
45
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
%
|
| CheckM Completeness |
94.67 %
|
| CheckM Contamination |
0.67 %
|
| CheckM2 Completeness |
94.38 %
|
| CheckM2 Contamination |
0.21 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
UHGG-TPA_MGYG-HGUT-00307
|
| GenBank Assembly Accession |
GCA_902461255.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_902461255.1
[NCBI]
|
| BioSample |
SAMEA5849809
[NCBI]
|
| BioProject |
PRJEB33885
[NCBI]
|
| Submitter |
EMG
|
| Submission Date |
2019-08-07T10:17:17.350
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
CABPWP01
|
| NCBI TaxID |
316088
|
| Isolation Source |
human gut
|
| Geo Location |
Sweden
|
