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Genome Meta Information:
Afipia
broomeae
MGYG-HGUT-03734 (GCA_902488705.1)
| HOMD Genome-ID |
GCA_902488705.1
|
| HOMD Taxon-ID |
HMT-559
|
| Species Name (in use by HOMD) |
Afipia broomeae
|
| Organism Name (as deposited) |
HMT-559 Afipia broomeae MGYG-HGUT-03734
|
| Strain or Isolate |
MGYG-HGUT-03734
|
GTDB (V)
Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Afipia;
s__Afipia broomeae |
| Sequencing Technology |
|
| Genome Coverage |
10.0x
|
| Contigs |
Number of Contigs: 233
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
5,238,503 (bp) |
| GC Percentage |
61.21
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/488/705/GCA_902488705.1_UHGG-TPA_MGYG-HGUT-03734
|
| CDS |
5080
|
| Genes |
5164
|
| mRNA |
5164
|
| misc RNA |
29
|
| rRNA |
2
|
| tRNA |
52
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
%
|
| CheckM Completeness |
97.53 %
|
| CheckM Contamination |
1.58 %
|
| CheckM2 Completeness |
98.31 %
|
| CheckM2 Contamination |
2.53 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
UHGG-TPA_MGYG-HGUT-03734
|
| GenBank Assembly Accession |
GCA_902488705.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
[NCBI]
|
| BioSample |
SAMEA5853240
[NCBI]
|
| BioProject |
PRJEB33885
[NCBI]
|
| Submitter |
EMG
|
| Submission Date |
2019-08-07T10:19:06.870
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
CABTXE01
|
| NCBI TaxID |
218203
|
| Isolation Source |
human gut
|
| Geo Location |
not provided
|
