Genome Meta Information: Veillonella parvula SKV38 (GCA_902810435.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_902810435.1 | ||
| HOMD Taxon-ID | HMT-0161 | ||
| Species Name (in use by HOMD) | Veillonella parvula | ||
| Organism Name (as deposited) | HMT-161 Veillonella parvula SKV38 | ||
| Strain or Isolate | SKV38 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella; s__Veillonella sp032483415 |
||
| Sequencing Technology | Pacbio sequel | ||
| Genome Coverage | 600 | ||
| Contigs |
|
||
| Total Sequence Length | 2,146,482 (bp) | ||
| GC Percentage | 38.74 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/810/435/GCA_902810435.1_SKV38 | ||
| CDS | 1912 | ||
| Genes | 1996 | ||
| mRNA | 1996 | ||
| misc RNA | 22 | ||
| rRNA | 12 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.35 % | ||
| CheckM Completeness | 98.36 % | ||
| CheckM Contamination | 1.66 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | SKV38 |
| GenBank Assembly Accession | GCA_902810435.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_902810435.1 [NCBI] |
| BioSample | SAMEA6589604 [NCBI] |
| BioProject | PRJEB36442 [NCBI] |
| Submitter | INSTITUT PASTEUR |
| Submission Date | 2020-04-29T08:11:46.563 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 29466 |
| Isolation Source | pediatric cohort consisted of 67 unique buccal molar plaque samples |
| Geo Location | USA |
