Genome Meta Information: Streptococcus thermophilus STH_CIRM_32 (GCA_903886345.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_903886345.1 | ||
| HOMD Taxon-ID | HMT-0152 | ||
| Species Name (in use by HOMD) | Streptococcus thermophilus | ||
| Organism Name (as deposited) | HMT-152 Streptococcus thermophilus STH_CIRM_32 | ||
| Strain or Isolate | STH_CIRM_32 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus thermophilus |
||
| Sequencing Technology | MinION_Nanopore,Illumina | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 1,860,069 (bp) | ||
| GC Percentage | 39.09 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/903/886/345/GCA_903886345.1_Streptococcus_thermophilus_CIRM_32 | ||
| CDS | 1948 | ||
| Genes | 2106 | ||
| mRNA | 2106 | ||
| misc RNA | 72 | ||
| rRNA | 18 | ||
| tRNA | 67 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.72 % | ||
| CheckM Completeness | 98.11 % | ||
| CheckM Contamination | 0.87 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | Streptococcus_thermophilus_CIR |
| GenBank Assembly Accession | GCA_903886345.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_903886345.1 [NCBI] |
| BioSample | SAMEA6957292 [NCBI] |
| BioProject | PRJEB36851 [NCBI] |
| Submitter | INRAE |
| Submission Date | 2020-06-19T19:06:05.146 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1308 |
| Isolation Source | artisanal lactic starter (for Emmental cheese making) |
| Geo Location | France |
