Genome Meta Information: Haemophilus influenzae 3655 (GCA_919949215.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_919949215.1 | ||
| HOMD Taxon-ID | HMT-0641 | ||
| Species Name (in use by HOMD) | Haemophilus influenzae | ||
| Organism Name (as deposited) | HMT-641 Haemophilus influenzae 3655 | ||
| Strain or Isolate | 3655 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus; s__Haemophilus influenzae_H |
||
| Sequencing Technology | PacBio Sequel II (with Illumina NovaSeq for polishing purpose) | ||
| Genome Coverage | 259 | ||
| Contigs |
|
||
| Total Sequence Length | 1,917,048 (bp) | ||
| GC Percentage | 38.17 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/919/949/215/GCA_919949215.1_KRLund_NTHi_Assembly_Genome3655 | ||
| CDS | 1828 | ||
| Genes | 1941 | ||
| mRNA | 1941 | ||
| misc RNA | 35 | ||
| rRNA | 20 | ||
| tRNA | 57 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.07 % | ||
| CheckM Completeness | 98.87 % | ||
| CheckM Contamination | 0.02 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | KRLund_NTHi_Assembly_Genome365 |
| GenBank Assembly Accession | GCA_919949215.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_919949215.1 [NCBI] |
| BioSample | SAMEA10982446 [NCBI] |
| BioProject | PRJEB48794 [NCBI] |
| Submitter | LUND UNIVERSITY |
| Submission Date | 2021-12-02T08:22:43.860 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 727 |
| Isolation Source | middle ear |
| Geo Location | USA |
