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Genome Meta Information:
Rothia mucilaginosa SRR1952379_bin.15_CONCOCT_v1.1_MAG (GCA_937890405.1)
| HOMD Genome-ID | GCA_937890405.1 |
| HOMD Taxon-ID | HMT-681 |
| Species Name (in use by HOMD) | Rothia mucilaginosa |
| Organism Name (as deposited) | HMT-681 Rothia mucilaginosa clade-681 SRR1952379_bin.15_CONCOCT_v1.1_MAG |
| Strain or Isolate | SRR1952379_bin.15_CONCOCT_v1.1_MAG |
| GTDB Taxonomy | d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia;
s__Rothia sp001836735 |
| Sequencing Technology | Illumina HiSeq 2000 |
| Genome Coverage | 163.0x |
| Contigs |
Number of Contigs: 90
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| Total Sequence Length | 2,379,345 (bp) |
| GC Percentage | 59.47 |
| MAG | yes |
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/890/405/GCA_937890405.1_SRR1952379_bin.15_CONCOCT_v1.1_MAG |
| CDS | 1868 |
| Genes | 1930 |
| mRNA | 1930 |
| misc RNA | 12 |
| rRNA | 4 |
| tRNA | 45 |
| tmRNA | 1 |
| CRISPR-cas |
No Available Data |
| Pangenomes (Beta) |
Rothia__mucilaginosa__HMT_147_681
Open SVG
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| Genome Assembly Name | SRR1952379_bin.15_CONCOCT_v1.1 |
| GenBank Assembly Accession |
GCA_937890405.1
[NCBI]
[GTDB]
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| RefSeq Assembly Accession |
GCF_937890405.1
[NCBI]
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| BioSample |
SAMEA14075696
[NCBI]
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| BioProject |
PRJEB50943
[NCBI]
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| Submitter | European Bioinformatics Institute |
| Submission Date | 2023-01-04T08:29:38.760 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | live |
| WGS Project | CALACA01 |
| NCBI TaxID | 316088 |
| Isolation Source | metagenome |
| Geo Location | not provided |
| ANI (Average Nucluotide Identity) | % |
| CheckM Completeness | 99.29 % |
| CheckM Percentile | 89.53488 % |
| CheckM Contamination | 1.97 % |
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