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Genome Meta Information:
Abiotrophia
defectiva
ERR589701_bin.29_CONCOCT_v1.1_MAG (GCA_937930255.1)
| HOMD Genome-ID |
GCA_937930255.1
|
| HOMD Taxon-ID |
HMT-389
|
| Species Name (in use by HOMD) |
Abiotrophia defectiva
|
| Organism Name (as deposited) |
HMT-389 Abiotrophia defectiva ERR589701_bin.29_CONCOCT_v1.1_MAG
|
| Strain or Isolate |
ERR589701_bin.29_CONCOCT_v1.1_MAG
|
GTDB (V)
Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Abiotrophia;
s__Abiotrophia defectiva |
| Sequencing Technology |
Illumina HiSeq 2000
|
| Genome Coverage |
10.0x
|
| Contigs |
Number of Contigs: 122
|
[Open
in Genome Viewer]
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Sequence]
[Linkout to
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|
|
| Total Sequence Length |
2,043,240 (bp) |
| GC Percentage |
46.81
|
| MAG |
yes
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/930/255/GCA_937930255.1_ERR589701_bin.29_CONCOCT_v1.1_MAG
|
| CDS |
1854
|
| Genes |
1892
|
| mRNA |
1892
|
| misc RNA |
19
|
| rRNA |
2
|
| tRNA |
16
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
95.51 %
|
| CheckM Completeness |
98.32 %
|
| CheckM Contamination |
0.54 %
|
| CheckM2 Completeness |
98.55 %
|
| CheckM2 Contamination |
1.53 %
|
| CRISPR-cas |
1 Contig
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ERR589701_bin.29_CONCOCT_v1.1_
|
| GenBank Assembly Accession |
GCA_937930255.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_937930255.1
[NCBI]
|
| BioSample |
SAMEA14084946
[NCBI]
|
| BioProject |
PRJEB51075
[NCBI]
|
| Submitter |
European Bioinformatics Institute
|
| Submission Date |
2023-01-04T08:31:49.936
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
CALGLG01
|
| NCBI TaxID |
46125
|
| Isolation Source |
human gut metagenome
|
| Geo Location |
China
|
