Genome Meta Information: Rothia mucilaginosa SRR8114056_bin.73_CONCOCT_v1.1_MAG (GCA_937936265.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_937936265.1 | ||
| HOMD Taxon-ID | HMT-681 | ||
| Species Name (in use by HOMD) | Rothia mucilaginosa | ||
| Organism Name (as deposited) | HMT-681 Rothia mucilaginosa clade-681 SRR8114056_bin.73_CONCOCT_v1.1_MAG | ||
| Strain or Isolate | SRR8114056_bin.73_CONCOCT_v1.1_MAG | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia sp001808955 |
||
| Sequencing Technology | Illumina HiSeq 4000 | ||
| Genome Coverage | 28.0x | ||
| Contigs |
|
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| Total Sequence Length | 2,266,204 (bp) | ||
| GC Percentage | 59.64 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/936/265/GCA_937936265.1_SRR8114056_bin.73_CONCOCT_v1.1_MAG | ||
| CDS | 1752 | ||
| Genes | 1818 | ||
| mRNA | 1818 | ||
| misc RNA | 12 | ||
| rRNA | 4 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.29 % | ||
| CheckM Completeness | 99.33 % | ||
| CheckM Contamination | 0.07 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.06 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
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| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | SRR8114056_bin.73_CONCOCT_v1.1 |
| GenBank Assembly Accession | GCA_937936265.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_937936265.1 [NCBI] |
| BioSample | SAMEA14086103 [NCBI] |
| BioProject | PRJEB51075 [NCBI] |
| Submitter | European Bioinformatics Institute |
| Submission Date | 2023-01-04T08:32:30.563 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | CALGWP01 |
| NCBI TaxID | 43675 |
| Isolation Source | human gut metagenome |
| Geo Location | Luxembourg |
