Genome Meta Information: Aggregatibacter segnis ERR589365_bin.97_CONCOCT_v1.1_MAG (GCA_938021175.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_938021175.1 | ||
| HOMD Taxon-ID | HMT-762 | ||
| Species Name (in use by HOMD) | Aggregatibacter segnis | ||
| Organism Name (as deposited) | HMT-762 Aggregatibacter segnis ERR589365_bin.97_CONCOCT_v1.1_MAG | ||
| Strain or Isolate | ERR589365_bin.97_CONCOCT_v1.1_MAG | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter segnis_B |
||
| Sequencing Technology | Illumina HiSeq 2000 | ||
| Genome Coverage | 16.0x | ||
| Contigs |
|
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| Total Sequence Length | 2,087,800 (bp) | ||
| GC Percentage | 42.58 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/021/175/GCA_938021175.1_ERR589365_bin.97_CONCOCT_v1.1_MAG | ||
| CDS | 1949 | ||
| Genes | 2087 | ||
| mRNA | 2087 | ||
| misc RNA | 102 | ||
| rRNA | 1 | ||
| tRNA | 35 | ||
| tmRNA | 0 | ||
| ANI (Average Nucluotide Identity) | 95.23 % | ||
| CheckM Completeness | 99.66 % | ||
| CheckM Contamination | 0.59 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.12 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ERR589365_bin.97_CONCOCT_v1.1_ |
| GenBank Assembly Accession | GCA_938021175.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMEA14084550 [NCBI] |
| BioProject | PRJEB51075 [NCBI] |
| Submitter | European Bioinformatics Institute |
| Submission Date | 2023-01-04T08:31:34.780 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | CALIHN01 |
| NCBI TaxID | 739 |
| Isolation Source | human gut metagenome |
| Geo Location | China |
