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Genome Meta Information:
Actinomyces
sp. HMT-897
ERR589373_bin.89_CONCOCT_v1.1_MAG (GCA_938030695.1)
| HOMD Genome-ID |
GCA_938030695.1
|
| HOMD Taxon-ID |
HMT-897
|
| Species Name (in use by HOMD) |
Actinomyces sp. HMT-897
|
| Organism Name (as deposited) |
HMT-897 Actinomyces sp. HMT-897 ERR589373_bin.89_CONCOCT_v1.1_MAG
|
| Strain or Isolate |
ERR589373_bin.89_CONCOCT_v1.1_MAG
|
GTDB (V)
Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;
s__Actinomyces sp002999235 |
| Sequencing Technology |
Illumina HiSeq 2000
|
| Genome Coverage |
32.0x
|
| Contigs |
Number of Contigs: 254
|
[Open
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Sequence]
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|
|
| Total Sequence Length |
3,164,958 (bp) |
| GC Percentage |
71.64
|
| MAG |
yes
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/030/695/GCA_938030695.1_ERR589373_bin.89_CONCOCT_v1.1_MAG
|
| CDS |
2454
|
| Genes |
2505
|
| mRNA |
2505
|
| misc RNA |
11
|
| rRNA |
0
|
| tRNA |
40
|
| tmRNA |
0
|
| ANI (Average Nucluotide Identity) |
%
|
| CheckM Completeness |
93.63 %
|
| CheckM Contamination |
0.51 %
|
| CheckM2 Completeness |
93.5 %
|
| CheckM2 Contamination |
1.1 %
|
| CRISPR-cas |
2 Contigs
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ERR589373_bin.89_CONCOCT_v1.1_
|
| GenBank Assembly Accession |
GCA_938030695.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_938030695.1
[NCBI]
|
| BioSample |
SAMEA14084570
[NCBI]
|
| BioProject |
PRJEB51075
[NCBI]
|
| Submitter |
European Bioinformatics Institute
|
| Submission Date |
2023-01-04T08:31:35.583
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
CALHHV01
|
| NCBI TaxID |
249061
|
| Isolation Source |
human gut metagenome
|
| Geo Location |
China
|
