Genome Meta Information: Alloiococcus otitis 1pMM6ns1sI_bin.1.MAG (GCA_943912975.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_943912975.1 | ||
| HOMD Taxon-ID | HMT-831 | ||
| Species Name (in use by HOMD) | Alloiococcus otitis | ||
| Organism Name (as deposited) | HMT-831 Alloiococcus otitis 1pMM6ns1sI_bin.1.MAG | ||
| Strain or Isolate | 1pMM6ns1sI_bin.1.MAG | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Alloiococcus; s__Alloiococcus otitis |
||
| Sequencing Technology | |||
| Genome Coverage | 99.0x | ||
| Contigs |
|
||
| Total Sequence Length | 1,592,740 (bp) | ||
| GC Percentage | 44.58 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/943/912/975/GCA_943912975.1_1pMM6ns1sI_bin.1.MAG | ||
| CDS | 1449 | ||
| Genes | 1505 | ||
| mRNA | 1505 | ||
| misc RNA | 24 | ||
| rRNA | 2 | ||
| tRNA | 29 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.8 % | ||
| CheckM Completeness | 96.74 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 97.39 % | ||
| CheckM2 Contamination | 0.23 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 1pMM6ns1sI_bin.1.MAG |
| GenBank Assembly Accession | GCA_943912975.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_943912975.1 [NCBI] |
| BioSample | SAMEA110088936 [NCBI] |
| BioProject | PRJEB47281 [NCBI] |
| Submitter | NIH/NHGRI |
| Submission Date | 2022-06-14T08:20:52.576 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | CALTVA01 |
| NCBI TaxID | 1652 |
| Isolation Source | human skin |
| Geo Location | USA |
