Genome Meta Information: Rothia mucilaginosa hIn5OIDK9I_bin.2.MAG (GCA_943914375.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_943914375.1 | ||
| HOMD Taxon-ID | HMT-681 | ||
| Species Name (in use by HOMD) | Rothia mucilaginosa | ||
| Organism Name (as deposited) | HMT-681 Rothia mucilaginosa clade-681 hIn5OIDK9I_bin.2.MAG | ||
| Strain or Isolate | hIn5OIDK9I_bin.2.MAG | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia mucilaginosa |
||
| Sequencing Technology | |||
| Genome Coverage | 99.0x | ||
| Contigs |
|
||
| Total Sequence Length | 2,162,589 (bp) | ||
| GC Percentage | 59.5 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/943/914/375/GCA_943914375.1_hIn5OIDK9I_bin.2.MAG | ||
| CDS | 1716 | ||
| Genes | 1776 | ||
| mRNA | 1776 | ||
| misc RNA | 13 | ||
| rRNA | 1 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 97.67 % | ||
| CheckM Contamination | 0.22 % | ||
| CheckM2 Completeness | 99.94 % | ||
| CheckM2 Contamination | 0.23 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | hIn5OIDK9I_bin.2.MAG |
| GenBank Assembly Accession | GCA_943914375.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_943914375.1 [NCBI] |
| BioSample | SAMEA110089333 [NCBI] |
| BioProject | PRJEB47281 [NCBI] |
| Submitter | NIH/NHGRI |
| Submission Date | 2022-06-14T08:20:55.523 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | CALUBU01 |
| NCBI TaxID | 316088 |
| Isolation Source | human skin |
| Geo Location | USA |
