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Genome Meta Information:
Abiotrophia
defectiva
qftHktE6oN_bin.12.MAG (GCA_946222135.1)
| HOMD Genome-ID |
GCA_946222135.1
|
| HOMD Taxon-ID |
HMT-389
|
| Species Name (in use by HOMD) |
Abiotrophia defectiva
|
| Organism Name (as deposited) |
HMT-389 Abiotrophia defectiva qftHktE6oN_bin.12.MAG
|
| Strain or Isolate |
qftHktE6oN_bin.12.MAG
|
GTDB (V)
Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Abiotrophia;
s__Abiotrophia defectiva |
| Sequencing Technology |
|
| Genome Coverage |
99.0x
|
| Contigs |
Number of Contigs: 121
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
1,974,280 (bp) |
| GC Percentage |
46.93
|
| MAG |
yes
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/946/222/135/GCA_946222135.1_qftHktE6oN_bin.12.MAG
|
| CDS |
1758
|
| Genes |
1793
|
| mRNA |
1793
|
| misc RNA |
22
|
| rRNA |
0
|
| tRNA |
12
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
95.71 %
|
| CheckM Completeness |
98.46 %
|
| CheckM Contamination |
1.53 %
|
| CheckM2 Completeness |
98.47 %
|
| CheckM2 Contamination |
1.13 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
qftHktE6oN_bin.12.MAG
|
| GenBank Assembly Accession |
GCA_946222135.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_946222135.1
[NCBI]
|
| BioSample |
SAMEA110089149
[NCBI]
|
| BioProject |
PRJEB47281
[NCBI]
|
| Submitter |
NIH/NHGRI
|
| Submission Date |
2022-08-11T08:21:12.353
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
CAMIKC01
|
| NCBI TaxID |
46125
|
| Isolation Source |
human skin
|
| Geo Location |
USA
|
