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Genome Meta Information:
Actinomyces
sp. HMT-448
YSbNyl2jJB_bin.12.MAG (GCA_946222855.1)
| HOMD Genome-ID |
GCA_946222855.1
|
| HOMD Taxon-ID |
HMT-448
|
| Species Name (in use by HOMD) |
Actinomyces sp. HMT-448
|
| Organism Name (as deposited) |
HMT-448 Actinomyces sp. HMT-448 YSbNyl2jJB_bin.12.MAG
|
| Strain or Isolate |
YSbNyl2jJB_bin.12.MAG
|
GTDB (V)
Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;
s__Actinomyces sp000220835 |
| Sequencing Technology |
|
| Genome Coverage |
99.0x
|
| Contigs |
Number of Contigs: 274
|
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Sequence]
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|
|
| Total Sequence Length |
2,520,844 (bp) |
| GC Percentage |
70.16
|
| MAG |
yes
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/946/222/855/GCA_946222855.1_YSbNyl2jJB_bin.12.MAG
|
| CDS |
2116
|
| Genes |
2163
|
| mRNA |
2163
|
| misc RNA |
14
|
| rRNA |
0
|
| tRNA |
32
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
%
|
| CheckM Completeness |
94.45 %
|
| CheckM Contamination |
1.2 %
|
| CheckM2 Completeness |
86.5 %
|
| CheckM2 Contamination |
1 %
|
| CRISPR-cas |
1 Contig
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
YSbNyl2jJB_bin.12.MAG
|
| GenBank Assembly Accession |
GCA_946222855.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_946222855.1
[NCBI]
|
| BioSample |
SAMEA110089269
[NCBI]
|
| BioProject |
PRJEB47281
[NCBI]
|
| Submitter |
NIH/NHGRI
|
| Submission Date |
2022-08-11T08:21:15.116
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
CAMIFP01
|
| NCBI TaxID |
249061
|
| Isolation Source |
human skin
|
| Geo Location |
USA
|
