HOMD ::Species:Alloprevotella sp. HMT-308

Species: Alloprevotella sp. HMT-308 (HMT-0308) Primary Body Site: Oral

Full Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae; Alloprevotella; Alloprevotella sp. HMT-308

LINKS: Ecology Home | HMT-0308: [Body Sites Data] [Taxon Description] | Life Page: Alloprevotella sp. HMT-308

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
ND:Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Species: Alloprevotella sp. HMT-308

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.01	0	0.02	0.02	0.05	0.10	0.15	0.11	0.13	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0.04	0.05	0.16	0.22	0.41	0.33	0.34	0
Stdev	0.02	0.01	0.06	0.04	0.08	0.28	0.22	0.19	0.26	0
Prev(%)	10.39	5.20	19.48	31.17	53.25	44.16	64.94	61.04	59.74	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.07	0.03	0.06	0.15	0.41	0.62	0.73	0.48	0.63	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0.02	0	0	0	0
90^thp	0.12	0.10	0.10	0.36	1.18	1.45	2.14	1.26	2.03	0
Stdev	0.30	0.07	0.27	0.28	0.53	0.87	0.97	0.70	0.82	0
Prev(%)	42.57	37.84	30.41	70.95	87.84	89.86	88.51	83.11	88.51	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.07	0.02	0.07	0.13	0.42	0.58	1.16	0.75	0.61	0.01	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.05	0.04	0.16	0.34	1.09	1.41	3.09	2.21	1.51	0	0	0	0	0	0	0	0	0
Stdev	0.54	0.04	0.19	0.20	0.51	1.05	1.39	1.12	0.76	0.08	0	0	0	0	0	0	0	0
Prev(%)	43.71	39.73	45.45	65.75	81.21	83.85	89.58	88.67	89.03	9.33	0	0	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

Notes:
Reads equidistant to HMT-308 and HMT-914 were assigned to each taxon in proportion to the abundance of HMT-308 and HMT-914 individually at this body site (SAL).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0.14	0.46	0.75	1.99	1.27	1.29	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0.06	0.07	0.04	0.04	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0.38	1.16	1.65	5.15	3.29	3.25	0	0	0	0	0	0	0	0	0
Stdev	0	0	0	0.23	0.65	1.02	2.38	1.70	1.59	0	0	0	0	0	0	0	0	0
Prev(%)	0	0	0	64.76	78.52	94.64	93.77	93.43	95.13	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.01	0	0.02	0.02	0.06	0.20	0.32	0.21	0.13	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.01	0.01	0.03	0.04	0.16	0.47	0.97	0.61	0.47	0
Stdev	0.01	0.02	0.08	0.04	0.07	0.56	0.37	0.25	0.21	0
Prev(%)	29.73	26.47	60.47	71.43	85.71	80.00	93.94	83.87	80.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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