HOMD ::Class:Betaproteobacteria

Class: Betaproteobacteria

Full Lineage: Bacteria; Pseudomonadota; Betaproteobacteria
Lower rank member(s): [Order:Burkholderiales] [Order:Neisseriales] [Order:Rhodocyclales]
Genera:

LINKS: Ecology Home | Life Page: Betaproteobacteria

Hide Legend

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Class: Betaproteobacteria

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	7.79	11.51	3.45	3.79	4.02	4.34	8.22	11.11	8.68	8.94	1.96	1.04	0.39	4.54	0.12	0.91	0.57	0.06
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	2.05	2.91	0.10	0.13	0.51	4.34	2.56	0.05	0.36	0.21	0.10	0.03	0.01	4.54	0.04	0.07	0.01	0
90^thp	14.62	22.89	9.84	8.93	9.51	4.34	12.85	26.78	23.09	23.96	6.28	1.18	0.72	4.54	0.18	2.14	1.87	0.06
Stdev	5.42	9.04	6.71	3.74	4.63	0	4.74	12.66	12.84	10.22	3.47	3.21	1.00	0	0.08	2.05	1.43	0.41
Prev(%)	95.83	99.49	66.67	80.00	81.73	100.00	87.50	71.43	77.27	95.04	6.15	13.04	16.67	0	0	25.00	3.19	1.33

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	11.56	13.60	2.55	4.23	5.00	6.72	6.55	6.77	9.97	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.91	3.67	0.01	0.34	0.48	0.77	0.18	0.18	0.09	0
90^thp	25.51	26.60	8.54	10.77	10.55	15.61	17.39	16.07	28.32	0
Stdev	10.44	9.83	4.80	5.27	4.83	6.70	8.78	8.32	11.39	0.03
Prev(%)	98.70	100.00	92.21	97.40	98.70	98.70	98.70	96.10	98.70	10.39

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	7.70	11.73	2.27	4.27	7.39	7.75	5.91	5.54	10.46	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.93	3.22	0	0.52	0.57	1.09	0.21	0.20	0.31	0
90^thp	17.41	22.33	7.45	9.89	19.58	16.46	14.49	15.53	27.17	0
Stdev	7.18	8.27	4.54	4.69	7.56	6.98	7.28	6.29	11.43	0.01
Prev(%)	100.00	100.00	89.19	99.32	100.00	99.32	99.32	96.62	98.65	3.50

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	11.37	13.94	3.90	5.45	6.06	6.99	7.83	6.68	9.17	5.03	1.93	2.50	4.19	3.67	0.46	0.13	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.69	4.49	0.05	0.49	0.55	0.86	0.26	0.22	0.12	0.04	0	0	0.18	0.10	0	0	0	0
90^thp	23.02	26.95	11.07	12.89	14.05	15.12	21.45	19.32	24.44	13.47	2.18	3.54	10.45	8.27	0.17	0.14	0.01	0
Stdev	9.22	10.26	5.84	5.53	6.51	7.26	11.46	9.01	9.78	9.13	8.96	10.07	7.15	7.38	2.41	0.66	0.05	0
Prev(%)	100.00	99.34	98.60	98.63	99.33	99.23	99.41	99.33	99.36	96.67	85.34	87.82	97.13	94.01	46.48	31.08	11.84	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	6.80	9.20	4.64	5.65	9.15	7.19	8.63	6.30	10.48	2.57	2.36	3.20	5.57	4.52	0.26	0.47	0.01	0.02
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.02	2.62	0.11	0.59	0.82	0.87	0.28	0.24	0.25	0	0	0	0.10	0.03	0	0	0	0
90^thp	14.24	17.98	13.20	11.99	22.12	16.85	22.04	17.83	26.48	6.57	4.34	6.63	12.27	12.44	0.47	0.17	0	0
Stdev	6.12	7.02	7.20	7.15	8.70	7.17	12.66	7.74	11.66	6.92	8.60	10.12	12.14	9.18	1.25	3.50	0.03	0.20
Prev(%)	100.00	99.76	94.81	99.01	99.49	99.70	98.44	98.78	98.30	81.23	86.94	84.57	95.17	92.00	32.76	25.68	7.85	8.52

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	4.17	3.63	3.49	3.75	7.99	5.91	4.56	3.88	7.06	0.76
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.07	0.30	0.04	0.08	0.77	0.09	0.09	0.07	0.12	0
90^thp	10.62	7.45	11.35	8.23	20.45	18.79	11.98	10.05	17.26	1.70
Stdev	6.87	5.51	8.13	5.71	9.71	8.21	6.65	4.95	9.97	1.58
Prev(%)	98.65	100.00	100.00	100.00	100.00	98.00	96.97	96.77	100.00	65.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	6.58	10.95	3.55	3.51	4.53	5.91	7.91	14.79	7.41	9.11	0.46	0.07	0.19	2.69	0.06	0.44	0.22	0.03
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	1.81	2.58	0.01	0.01	0.27	5.91	1.47	0	0.04	0.17	0	0	0	2.69	0	0	0	0
90^thp	12.85	21.47	10.07	9.27	10.94	5.91	13.04	33.30	18.52	23.57	0.81	0.26	0.11	2.69	0.04	0.17	0.13	0
Stdev	4.47	8.71	7.82	4.34	5.66	0	5.44	15.04	12.25	10.75	2.04	0.15	0.78	0	0.18	1.52	1.35	0.23
Prev(%)	100.00	99.75	91.67	88.23	96.28	100.00	87.50	81.25	92.00	96.95	25.68	50.00	37.50	100.00	27.27	42.86	21.21	6.00

Copyright 2007-2025, The Forsyth Institute
Hosted on Amazon AWS EC2

Body Site Legend: