HOMD ::Species:Capnocytophaga granulosa

Species: Capnocytophaga granulosa (HMT-0325) Primary Body Site: Oral

Full Lineage: Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga; Capnocytophaga granulosa

LINKS: Ecology Home | HMT-0325: [Body Sites Data] [Taxon Description] | Life Page: Capnocytophaga granulosa

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Capnocytophaga granulosa

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.47	0.66	0.46	0.01	0.07	0	0.05	0.12	0.06	0.04	0.01	0	0	0.01	0	0.03	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.04	0.03	0	0	0	0	0.02	0.01	0	0	0	0	0	0.01	0	0	0	0
90^thp	1.18	1.69	1.22	0.03	0.13	0	0.07	0.32	0.24	0.08	0.01	0.01	0	0.01	0	0.09	0	0
Stdev	0.65	1.16	0.81	0.03	0.27	0	0.03	0.18	0.12	0.14	0.01	0.01	0	0	0	0.09	0.01	0.01
Prev(%)	70.83	69.87	37.50	6.67	11.15	0	0	28.57	13.64	20.33	1.54	0	0	0	0	12.50	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

Notes:
reads equally close to C. gingivalis and C. granulosa were assigned half to each taxon

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.79	2.02	0.02	0.26	0.04	0.24	0.19	0.38	0.09	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.11	0.10	0	0	0	0	0	0	0	0
90^thp	3.99	4.68	0.05	0.33	0.11	0.57	0.59	0.98	0.22	0
Stdev	1.69	2.12	0.08	0.86	0.08	0.41	0.41	1.00	0.20	0
Prev(%)	94.81	94.81	32.47	83.12	61.04	80.52	63.64	74.03	62.34	1.30

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.90	1.57	0	0.13	0.05	0.26	0.13	0.24	0.04	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	3.10	4.41	0	0.26	0.10	0.79	0.23	0.49	0.07	0
Stdev	1.40	2.35	0.01	0.38	0.17	0.42	0.39	1.00	0.17	0
Prev(%)	78.38	82.43	8.11	66.89	45.27	72.30	43.92	47.30	31.76	0.70

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

Notes:
Reads equidistant to HMT-325 and HMT-337 were assigned to each taxon in proportion to the abundance of HMT-325 and HMT-337 individually at this body site (SUBP).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.47	0.60	0.01	0.06	0.01	0.08	0.10	0.21	0.02	0	0	0.01	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.57	1.68	0.02	0.11	0.05	0.23	0.12	0.47	0.05	0	0	0	0	0	0	0	0	0
Stdev	1.00	1.19	0.04	0.19	0.05	0.17	0.53	0.81	0.08	0	0.02	0.06	0	0	0	0	0	0
Prev(%)	70.86	70.86	21.68	49.31	29.53	54.62	30.06	49.33	32.90	0	4.60	2.83	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.17	1.67	0.04	0.30	0.05	0.23	0.17	0.28	0.05	0	0	0	0	0.13	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	3.65	4.55	0.06	0.65	0.14	0.57	0.36	0.54	0.10	0	0	0	0	0.04	0	0	0	0
Stdev	1.81	2.45	0.26	0.85	0.12	0.37	0.66	1.15	0.18	0	0	0	0	0.68	0	0	0	0
Prev(%)	81.48	84.88	19.26	66.25	39.64	73.51	46.42	56.20	43.07	0	0	0	0	12.00	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

Notes:
Reads equally close to HMT 325 and 337 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	1.32	2.22	0.04	0.09	0.44	0.03	0.16	0.02	0.03	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0.04	0	0	0	0	0	0	0	0
90^thp	4.38	7.23	0.07	0.16	0.15	0.06	0.12	0.05	0.06	0
Stdev	3.21	2.82	0.09	0.18	2.12	0.05	0.67	0.04	0.12	0
Prev(%)	89.19	97.06	67.44	85.71	78.57	80.00	66.67	67.74	55.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.49	0.79	0.59	0.02	0.10	0	0.01	0.57	0.04	0.05	0.04	0	0	0	0	0.01	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.36	2.21	1.44	0.02	0.15	0	0.02	0.40	0.01	0.07	0	0	0	0	0	0	0	0
Stdev	0.84	1.54	1.14	0.06	0.51	0	0.01	2.07	0.15	0.18	0.62	0	0	0	0	0.04	0.16	0.01
Prev(%)	79.17	74.75	50.00	23.53	26.86	0	25.00	18.75	16.00	27.93	0.90	0	3.13	0	0	7.14	1.51	0.36

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