HOMD ::Species:Capnocytophaga leadbetteri

Species: Capnocytophaga leadbetteri (HMT-0329) Primary Body Site: Oral

Full Lineage: Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga; Capnocytophaga leadbetteri

LINKS: Ecology Home | HMT-0329: [Body Sites Data] [Taxon Description] | Life Page: Capnocytophaga leadbetteri

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Capnocytophaga leadbetteri

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	1.13	1.33	0.22	0.10	0.17	0.01	0.34	0.62	1.14	0.13	0.02	0.01	0.01	0.02	0	0.16	0.01	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.17	0.08	0	0	0.01	0.01	0.14	0.01	0.01	0	0	0	0	0.02	0	0	0	0
90^thp	2.29	3.00	0.70	0.26	0.37	0.01	0.52	1.31	1.01	0.28	0.04	0.02	0.01	0.02	0	0.38	0.01	0
Stdev	1.28	1.47	0.38	0.11	0.37	0	0.16	0.62	4.19	0.36	0.06	0.01	0.02	0	0	0.44	0.02	0.03
Prev(%)	83.33	90.89	33.33	53.33	27.86	0	62.50	85.71	50.00	50.12	1.54	0	3.33	0	0	12.50	0	0.27

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	2.15	2.44	0.28	0.47	0.08	0.45	0.34	0.51	0.09	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.02	0	0	0	0	0	0	0	0	0
90^thp	4.96	6.08	0.69	0.75	0.18	1.19	0.81	1.68	0.18	0
Stdev	2.85	2.76	0.70	1.53	0.12	0.70	0.92	1.22	0.19	0
Prev(%)	92.21	88.31	49.35	79.22	70.13	76.62	63.64	72.73	62.34	1.30

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.20	0.30	0.07	0.04	0.01	0.08	0.04	0.07	0.02	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.49	0.76	0.08	0.09	0.04	0.21	0.09	0.17	0.04	0
Stdev	0.37	0.44	0.52	0.13	0.04	0.15	0.10	0.25	0.05	0
Prev(%)	68.24	79.05	25.68	31.08	29.05	56.76	31.08	37.84	20.27	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.48	1.93	0.47	0.33	0.07	0.42	0.33	0.53	0.16	0	0.05	0.02	0.03	0.10	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.01	0.04	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	3.20	4.42	1.51	0.72	0.21	1.13	0.83	1.74	0.23	0	0.01	0	0.01	0.02	0	0	0	0
Stdev	1.90	1.90	1.43	0.77	0.12	0.64	0.98	1.26	0.57	0	0.52	0.18	0.21	0.82	0	0	0	0
Prev(%)	90.73	94.70	68.53	82.88	67.78	80.77	61.91	73.33	65.81	0	11.21	8.21	10.92	11.52	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.90	2.23	0.69	0.49	0.16	0.61	0.46	0.60	0.18	0	0.07	0	0.19	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.03	0.07	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	4.52	4.92	1.82	1.16	0.37	1.44	1.28	1.44	0.27	0	0.03	0	0.42	0	0	0	0	0
Stdev	2.51	2.29	1.90	1.05	0.53	1.16	1.47	1.90	0.59	0	0.45	0	0.72	0	0	0	0	0
Prev(%)	92.35	95.85	59.75	81.14	62.92	86.01	65.73	75.43	61.07	0	14.65	0	21.38	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.49	0.98	0.13	0.09	0.04	0.10	0.13	0.09	0.09	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	1.51	2.54	0.14	0.16	0.07	0.30	0.10	0.13	0.08	0
Stdev	1.14	1.40	0.41	0.23	0.09	0.17	0.41	0.31	0.45	0
Prev(%)	78.38	88.23	88.37	71.43	75.00	84.00	72.73	61.29	50.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	1.15	1.36	0.21	0.13	0.22	0.02	0.30	0.35	0.11	0.04	0.01	0	0	0	0	0.07	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.08	0.04	0	0	0	0.02	0.06	0	0	0	0	0	0	0	0	0	0	0
90^thp	2.09	3.04	0.58	0.41	0.54	0.02	0.56	1.15	0.43	0.07	0	0	0	0	0	0	0	0
Stdev	1.39	1.58	0.42	0.20	0.58	0	0.24	0.51	0.17	0.10	0.08	0	0.01	0	0	0.25	0.01	0.02
Prev(%)	95.83	95.20	58.33	58.82	63.03	100.00	87.50	50.00	56.00	51.17	3.60	0	6.25	0	0	7.14	2.52	0.55

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