HOMD ::Species:Capnocytophaga periodontitidis

Species: Capnocytophaga periodontitidis (HMT-0326) Primary Body Site: Oral

Full Lineage: Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga; Capnocytophaga periodontitidis

LINKS: Ecology Home | HMT-0326: [Body Sites Data] [Taxon Description] | Life Page: Capnocytophaga periodontitidis

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 ND:HMPv3v5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Species: Capnocytophaga periodontitidis

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.64	0.66	0.17	0.02	0.07	0.01	0.11	0.18	0.10	0.05	0.01	0.01	0.01	0.02	0	0.10	0.01	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.20	0.13	0.01	0	0.01	0.01	0.04	0.01	0	0	0	0	0	0.02	0	0	0	0
90^thp	1.24	1.35	0.35	0.05	0.14	0.01	0.22	0.49	0.29	0.12	0.01	0.01	0	0.02	0	0.23	0	0
Stdev	0.49	0.62	0.15	0.04	0.13	0	0.07	0.36	0.21	0.13	0.03	0.01	0.02	0	0	0.26	0.03	0.02
Prev(%)	83.33	92.15	41.67	6.67	11.76	0	37.50	28.57	13.64	21.28	1.54	0	0	0	0	12.50	0	0.27

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.67	0.46	0.01	0.04	0.01	0.04	0	0.01	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	1.63	1.24	0	0.07	0.04	0.14	0	0	0	0
Stdev	1.85	1.12	0.04	0.14	0.02	0.08	0.01	0.02	0.01	0
Prev(%)	57.14	51.95	10.39	28.57	19.48	32.47	9.09	9.09	7.79	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.52	0.50	0	0.04	0.01	0.05	0	0.01	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	1.55	1.68	0	0.10	0.01	0.13	0.01	0.03	0	0
Stdev	1.02	0.93	0.03	0.11	0.02	0.12	0.01	0.03	0.01	0
Prev(%)	59.46	61.49	3.38	27.03	13.51	47.30	11.49	14.87	4.73	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.67	0.54	0.04	0.04	0	0.05	0	0	0	0	0	0	0	0.01	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.86	1.58	0.03	0.06	0	0.14	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	1.65	1.13	0.25	0.12	0	0.17	0	0	0	0	0.04	0	0	0.05	0	0	0	0
Prev(%)	62.25	63.58	16.78	38.36	0	40.00	0	0	0	0	2.59	0	0	3.69	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.46	0.74	0.03	0.03	0.03	0.01	0.01	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	1.36	2.25	0.07	0.08	0.06	0.03	0	0	0	0
Stdev	1.02	1.28	0.09	0.05	0.06	0.02	0.02	0.01	0	0
Prev(%)	63.51	79.41	44.19	65.71	50.00	50.00	21.21	29.03	15.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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