HOMD ::Species:Capnocytophaga sp. HMT-338

Species: Capnocytophaga sp. HMT-338 (HMT-0338) Primary Body Site: Oral

Full Lineage: Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga; Capnocytophaga sp. HMT-338

LINKS: Ecology Home | HMT-0338: [Body Sites Data] [Taxon Description] | Life Page: Capnocytophaga sp. HMT-338

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping ND:Erenv1v3 Eren V3-V5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Species: Capnocytophaga sp. HMT-338

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.36	0.10	0.07	0.01	0.01	0	0.03	0.02	0.02	0.01	0	0	0	0	0	0.01	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.04	0.02	0.01	0	0	0	0.01	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.82	0.21	0.17	0.01	0.03	0	0.07	0.04	0.06	0.02	0	0	0	0	0	0.03	0	0
Stdev	0.45	0.09	0.06	0.01	0.02	0	0.03	0.02	0.05	0.01	0	0	0	0	0	0.04	0	0
Prev(%)	54.17	25.57	29.17	6.67	0.31	0	0	0	0	0	0	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.08	0.02	0	0	0	0.01	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.20	0.06	0	0	0	0.01	0	0	0	0
Stdev	0.18	0.06	0.01	0.01	0.01	0.01	0	0.02	0	0
Prev(%)	38.51	23.65	1.35	4.05	4.05	10.81	3.38	4.05	0.68	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.10	0.02	0	0	0	0	0	0.01	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.32	0.06	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.21	0.07	0	0	0	0	0	0.06	0	0	0	0	0	0	0	0	0	0
Prev(%)	42.38	30.46	0	0	0	0	0	8.67	0	0	0	0	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.15	0.03	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.46	0.09	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.36	0.10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Prev(%)	43.70	28.05	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.09	0.02	0.01	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.26	0.06	0	0.01	0.01	0	0	0	0	0
Stdev	0.24	0.04	0.06	0.01	0.01	0	0	0	0	0
Prev(%)	45.95	52.94	18.61	31.43	21.43	8.00	12.12	6.45	5.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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