HOMD ::Species:Fusobacterium animalis

Species: Fusobacterium animalis (HMT-0420) Primary Body Site: Oral

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium; Fusobacterium animalis

LINKS: Ecology Home | HMT-0420: [Body Sites Data] [Taxon Description] | Life Page: Fusobacterium animalis

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Species: Fusobacterium animalis

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	1.14	0.23	0.73	0.06	0.05	0.01	0.09	0.06	0.37	0.03	0	0	0	0.01	0.09	0.03	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.16	0.02	0.08	0	0.01	0.01	0.03	0.02	0.03	0.01	0	0	0	0.01	0	0	0	0
90^thp	2.81	0.53	1.74	0.09	0.13	0.01	0.15	0.11	0.88	0.06	0.01	0.01	0	0.01	0.26	0.07	0	0
Stdev	1.03	0.42	0.74	0.11	0.08	0	0.05	0.04	0.57	0.05	0.01	0.01	0	0	0.18	0.05	0.01	0
Prev(%)	87.50	65.57	75.00	13.33	8.67	0	12.50	42.86	45.45	25.06	1.54	0	0	0	25.00	12.50	2.13	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.79	0.44	0.02	0.11	0.05	0.20	0.14	0.73	0.03	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.02	0	0	0	0	0	0	0	0	0
90^thp	3.97	0.92	0.05	0.19	0.13	0.56	0.16	1.22	0.06	0
Stdev	3.31	1.10	0.09	0.29	0.15	0.28	0.64	2.72	0.05	0
Prev(%)	90.91	74.03	27.27	68.83	44.16	70.13	53.25	77.92	49.35	1.30

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	3.72	1.12	0.03	0.30	0.08	0.42	0.09	0.62	0.05	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.09	0	0	0	0	0.03	0	0	0	0
90^thp	10.56	3.15	0.09	0.57	0.12	0.99	0.22	0.68	0.12	0
Stdev	4.99	1.82	0.17	0.98	0.32	0.60	0.21	2.17	0.08	0
Prev(%)	95.27	88.51	22.97	81.76	56.76	91.89	56.76	77.03	54.73	1.40

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

Notes:
Reads equidistant to HMT-200 and HMT-420 were assigned to each taxon in proportion to the abundance of HMT-200 and HMT-420 individually at these sites (SUBP,THR).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	2.19	0.43	0.10	0.10	0.04	0.21	0.12	0.68	0.02	0.01	0	0	0.02	0.02	0.17	0.12	0.03	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.03	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	5.01	1.02	0.11	0.28	0.10	0.54	0.22	1.42	0.05	0.01	0	0	0.02	0	0.03	0.02	0	0
Stdev	3.40	0.95	0.51	0.18	0.06	0.36	0.51	2.40	0.04	0.05	0	0	0.11	0.09	0.83	0.70	0.21	0
Prev(%)	94.70	81.46	37.76	76.03	60.40	70.77	51.49	81.33	56.77	13.33	0	0	12.07	8.29	18.31	10.81	7.89	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	3.03	0.62	0.12	0.30	0.09	0.35	0.19	0.77	0	0	0.06	0	0	0	0.09	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.07	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	7.48	1.62	0.20	0.73	0.27	0.78	0.41	1.72	0	0	0.02	0	0	0	0.04	0	0	0
Stdev	4.70	1.20	0.57	0.64	0.16	0.55	0.60	2.24	0	0	0.51	0	0	0	0.46	0	0	0
Prev(%)	96.30	85.37	31.11	77.92	54.99	83.63	60.13	82.72	0	0	12.10	0	0	0	27.59	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

Notes:
Reads equally close to HMT 200 and 420 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	4.55	1.03	0.13	0.22	0.11	0.04	0.06	0.16	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0.05	0.02	0	0	0	0	0	0	0	0
90^thp	11.97	2.55	0.12	0.69	0.30	0.09	0.21	0.31	0.02	0
Stdev	7.04	1.76	0.54	0.42	0.28	0.04	0.10	0.37	0.01	0
Prev(%)	98.65	97.06	72.09	94.29	85.71	86.00	93.94	87.10	70.00	5.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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