Species: Fusobacterium naviforme (HMT-0689) Primary Body Site: Unassigned
Download Options
LINKS: Ecology Home
| HMT-0689: [Body Sites Data]
[Taxon Description]
| Life Page: Fusobacterium naviforme
Hide Legend
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Human Microbiome Project Mapping (Data from healthy subjects. - not published)
No Notes
Eren V1-V3 www.pnas.org
(Data from healthy subjects.)
Notes:
reads equally close to F. nucleatum subsp. polymorphum, F. nucleatum subsp. vincentii, and F. polymorphum were assigned one third to each taxon
reads equally close to F. nucleatum subsp. polymorphum, F. nucleatum subsp. vincentii, and F. polymorphum were assigned one third to each taxon
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
| Avg (%) | 0.28 | 0.07 | 0.01 | 0.03 | 0.01 | 0.04 | 0.05 | 0.10 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0.45 | 0.18 | 0 | 0.02 | 0 | 0.09 | 0.03 | 0.07 | 0.01 | 0 |
| Stdev | 1.03 | 0.22 | 0.07 | 0.10 | 0.03 | 0.18 | 0.30 | 0.50 | 0.01 | 0 |
| Prev(%) | 25.97 | 22.08 | 6.49 | 14.29 | 9.09 | 22.08 | 15.58 | 19.48 | 11.69 | 0 |
Eren V3-V5 www.pnas.org
(Data from healthy subjects.)
Notes:
Reads equally close to F. nucleatum subsp. naviforme and F. nucleatum subsp. vincentii were assigned half to each taxon.
Reads equally close to F. nucleatum subsp. naviforme and F. nucleatum subsp. vincentii were assigned half to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
| Avg (%) | 2.56 | 0.74 | 0.06 | 0.13 | 0.05 | 0.21 | 0.14 | 0.47 | 0.02 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0.05 | 0.01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 6.43 | 1.89 | 0.08 | 0.23 | 0.14 | 0.51 | 0.13 | 0.79 | 0.07 | 0 |
| Stdev | 3.16 | 0.98 | 0.39 | 0.48 | 0.09 | 0.26 | 1.09 | 1.72 | 0.04 | 0 |
| Prev(%) | 97.97 | 91.22 | 41.22 | 71.62 | 56.76 | 86.49 | 62.84 | 74.32 | 48.65 | 0 |
Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)
No Notes
Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)
Notes:
Some of the reads equidistant from these taxa (200-204-689) are included in HMT-689 because they are too close to differentiate at this site (SAL).
Reads equidistant to HMT-200 and HMT-689 were assigned to each taxon in proportion to the abundance of HMT-200 and HMT-689 individually at these sites (SUBP,SUPP).
Some of the reads equidistant from these taxa (200-204-689) are included in HMT-689 because they are too close to differentiate at this site (SAL).
Reads equidistant to HMT-200 and HMT-689 were assigned to each taxon in proportion to the abundance of HMT-200 and HMT-689 individually at these sites (SUBP,SUPP).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0.77 | 0.10 | 0 | 0 | 0 | 0.10 | 0 | 0.12 | 0 | 0 | 0.01 | 0 | 0.16 | 0 | 0 | 0 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0.01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 1.74 | 0.17 | 0 | 0 | 0 | 0.25 | 0 | 0.14 | 0 | 0 | 0 | 0 | 0.17 | 0 | 0 | 0 | 0 | 0 |
| Stdev | 1.55 | 0.41 | 0 | 0 | 0 | 0.19 | 0 | 0.60 | 0 | 0 | 0.10 | 0 | 0.80 | 0 | 0 | 0 | 0 | 0 |
| Prev(%) | 92.84 | 61.95 | 0 | 0 | 0 | 64.58 | 0 | 35.52 | 0 | 0 | 5.10 | 0 | 32.41 | 0 | 0 | 0 | 0 | 0 |
Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)
Notes:
Reads equally close to HMT 200 and 689 were assigned half to each taxon.
Reads equally close to HMT 200 and 689 were assigned half to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
| Avg (%) | 0.52 | 0.12 | 0.01 | 0.02 | 0.04 | 0 | 0.02 | 0.16 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 1.49 | 0.37 | 0.05 | 0.03 | 0.04 | 0.01 | 0.01 | 0.26 | 0 | 0 |
| Stdev | 1.10 | 0.20 | 0.03 | 0.05 | 0.15 | 0.01 | 0.12 | 0.70 | 0 | 0 |
| Prev(%) | 82.43 | 79.41 | 37.21 | 57.14 | 39.29 | 42.00 | 36.36 | 45.16 | 12.50 | 0 |
Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Stdev | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Prev(%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.51 | 0 |
