HOMD ::Species:Fusobacterium necrophorum

Species: Fusobacterium necrophorum (HMT-0690) Primary Body Site: Oral

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium; Fusobacterium necrophorum

LINKS: Ecology Home | HMT-0690: [Body Sites Data] [Taxon Description] | Life Page: Fusobacterium necrophorum

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Fusobacterium necrophorum

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0.01	0	0	0	0	0	0.01	0	0	0	0	0	0	0	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.01	0	0.02	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0	0	0.01	0	0	0	0	0	0.04	0.01	0	0	0	0	0	0	0	0
Prev(%)	0	0	0	0	0	0	0	0	0	1.18	0	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0	0	0	0	0	0	0.06	0.22	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0.04	0	0
Stdev	0	0	0	0	0	0.03	0.41	1.06	0	0
Prev(%)	0	0	0	0	0	2.60	7.79	10.39	1.30	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to F. gonidiaformans and F. necrophorum were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0	0	0	0	0	0	0.02	0.05	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0
Stdev	0	0	0	0	0	0.01	0.14	0.33	0	0
Prev(%)	0	0	1.35	0	0.68	5.41	7.43	9.46	0.68	0.70

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0	0.17	0.19	0	0.01	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0.07	0	0	0	0	0	0	0	0	0	0
Stdev	0	0	0	0	0	0	2.24	0.80	0	0.24	0	0	0	0	0	0	0	0
Prev(%)	0	0	0	0	0	0	8.63	16.00	0	1.33	0	0	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0.03	0.23	0.19	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0.01	0.10	0	0	0	0	0	0	0	0	0	0
Stdev	0	0	0	0	0	0.27	2.77	1.14	0	0	0	0	0	0	0	0	0	0
Prev(%)	0	0	0	0	0	4.76	10.28	13.14	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0	0	0	0	0	0	0	0.01	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0
Stdev	0	0	0	0	0	0	0	0.03	0	0
Prev(%)	0	0	0	0	0	0	3.03	3.23	0	5.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0	0	0	0	0	0.01	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0	0	0	0	0	0	0	0	0.04	0.01	0.03	0	0	0	0	0	0	0
Prev(%)	0	0	0	0	0	0	0	0	4.00	1.64	0.45	0	0	0	0	0	0	0

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