Species: Fusobacterium sp. HMT-203 (HMT-0203) Primary Body Site: Oral
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LINKS: Ecology Home
| HMT-0203: [Body Sites Data]
[Taxon Description]
| Life Page: Fusobacterium sp. HMT-203
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Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Human Microbiome Project Mapping (Data from healthy subjects. - not published)
No Notes
Eren V1-V3 www.pnas.org
(Data from healthy subjects.)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
| Avg (%) | 0.36 | 0.10 | 0.01 | 0.01 | 0.01 | 0.03 | 0.09 | 0.07 | 0.01 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 1.15 | 0.33 | 0 | 0.05 | 0.04 | 0.09 | 0.07 | 0.20 | 0.02 | 0 |
| Stdev | 0.99 | 0.23 | 0.03 | 0.03 | 0.02 | 0.11 | 0.36 | 0.17 | 0.02 | 0 |
| Prev(%) | 45.45 | 35.06 | 9.09 | 25.97 | 25.97 | 27.27 | 27.27 | 44.16 | 16.88 | 0 |
Eren V3-V5 www.pnas.org
(Data from healthy subjects.)
Notes:
Reads equally close to F. nucleatum subsp. nucleatum,F. nucleatum subsp. polymorphum, and F. sp. HMT 203 were assigned one-third to each taxon.
Reads equally close to F. nucleatum subsp. nucleatum,F. nucleatum subsp. polymorphum, and F. sp. HMT 203 were assigned one-third to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
| Avg (%) | 1.48 | 1.52 | 0.34 | 0.20 | 0.04 | 0.23 | 0.07 | 0.12 | 0.05 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0.11 | 0.12 | 0 | 0.01 | 0 | 0.02 | 0 | 0 | 0 | 0 |
| 90thp | 3.63 | 3.55 | 1.13 | 0.45 | 0.11 | 0.52 | 0.13 | 0.23 | 0.09 | 0 |
| Stdev | 1.35 | 1.33 | 0.61 | 0.35 | 0.05 | 0.23 | 0.15 | 0.29 | 0.11 | 0 |
| Prev(%) | 98.65 | 99.32 | 87.84 | 97.30 | 79.05 | 93.24 | 84.46 | 90.54 | 85.14 | 1.40 |
Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)
Notes:
Because HMT-698 is not present individually, all equidistant reads were assigned to HMT-203 at these sites (AKE,PTO,SUPP).
Because HMT-698 is not present individually, all equidistant reads were assigned to HMT-203 at these sites (AKE,PTO,SUPP).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0.75 | 0.22 | 0.22 | 0.02 | 0 | 0.09 | 0.12 | 0.30 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 2.86 | 0.50 | 0.15 | 0.03 | 0 | 0.19 | 0.04 | 0.23 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Stdev | 1.86 | 0.72 | 1.80 | 0.09 | 0 | 0.28 | 1.39 | 1.73 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Prev(%) | 72.19 | 63.58 | 32.17 | 18.49 | 0 | 44.62 | 21.43 | 64.00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)
Notes:
Reads equidistant to HMT-202 and HMT-203 were assigned to each taxon in proportion to the abundance of HMT-202 and HMT-203 individually at these sites (AKE,PTO,SUBP,SUPP,THR).
Neither HMT-202 nor HMT-203 were present singularly so these reads were split evenly at this site (LAF).
Because HMT-202 is not present individually, all equidistant reads were assigned to HMT-203 at this body site (RAF).
Some of the reads equidistant from these taxa (202-203-370-953) are included in HMT-203 because they are too close to differentiate at these sites (PTO,SUBP,SUPP).
Some of the reads equidistant from these taxa (202-203-698) are included in HMT-203 because they are too close to differentiate at these sites (SUBP,SUPP).
Some of the reads equidistant from these taxa (200-202-203) are included in HMT-203 because they are too close to differentiate at this site (SUPP).
Reads equidistant to HMT-202 and HMT-203 were assigned to each taxon in proportion to the abundance of HMT-202 and HMT-203 individually at these sites (AKE,PTO,SUBP,SUPP,THR).
Neither HMT-202 nor HMT-203 were present singularly so these reads were split evenly at this site (LAF).
Because HMT-202 is not present individually, all equidistant reads were assigned to HMT-203 at this body site (RAF).
Some of the reads equidistant from these taxa (202-203-370-953) are included in HMT-203 because they are too close to differentiate at these sites (PTO,SUBP,SUPP).
Some of the reads equidistant from these taxa (202-203-698) are included in HMT-203 because they are too close to differentiate at these sites (SUBP,SUPP).
Some of the reads equidistant from these taxa (200-202-203) are included in HMT-203 because they are too close to differentiate at this site (SUPP).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 1.94 | 0.25 | 0.74 | 0 | 0 | 0 | 0.22 | 0.43 | 0 | 0 | 0 | 0 | 0.10 | 0.81 | 0 | 0 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0.15 | 0.01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 4.47 | 0.53 | 1.66 | 0 | 0 | 0 | 0.38 | 0.81 | 0 | 0 | 0 | 0 | 0.31 | 1.38 | 0 | 0 | 0 | 0 |
| Stdev | 2.51 | 0.51 | 2.02 | 0 | 0 | 0 | 0.96 | 1.35 | 0 | 0 | 0 | 0 | 0.25 | 3.78 | 0 | 0 | 0 | 0 |
| Prev(%) | 98.27 | 98.54 | 88.39 | 0 | 0 | 0 | 69.47 | 87.11 | 0 | 0 | 0 | 0 | 36.55 | 47.33 | 0 | 0 | 0 | 0 |
Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
| Avg (%) | 0.97 | 0.08 | 0.02 | 0.04 | 0.07 | 0.02 | 0.02 | 0.04 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0.56 | 0.17 | 0.07 | 0.17 | 0.08 | 0.06 | 0.03 | 0.14 | 0.01 | 0 |
| Stdev | 3.79 | 0.28 | 0.07 | 0.08 | 0.27 | 0.04 | 0.08 | 0.09 | 0.01 | 0 |
| Prev(%) | 78.38 | 73.53 | 37.21 | 60.00 | 60.71 | 66.00 | 60.61 | 64.52 | 27.50 | 0 |
Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)
No Notes
