HOMD ::Species:Hoylesella shahii

Species: Hoylesella shahii (HMT-0795) Primary Body Site: Oral

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Full Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae; Hoylesella; Hoylesella shahii

LINKS: Ecology Home | HMT-0795: [Body Sites Data] [Taxon Description] | Life Page: Hoylesella shahii

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Species: Hoylesella shahii

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.02	0.02	0.02	0.01	0.03	0.10	0.12	0.29	0.26	0.23	0.01	0	0	0.01	0	0	0.02	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0.10	0.01	0.01	0.01	0	0	0	0	0.01	0	0	0	0
90^thp	0.04	0.04	0.05	0.03	0.06	0.10	0.30	0.91	0.78	0.84	0.04	0	0	0.01	0	0	0.01	0.01
Stdev	0.03	0.05	0.03	0.02	0.10	0	0.26	0.54	0.47	0.46	0.02	0	0	0	0	0	0.15	0.01
Prev(%)	0	1.01	0	0	5.26	100.00	12.50	28.57	40.91	42.79	1.54	0	0	0	0	0	1.06	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.04	0.03	0	0.02	0.07	0.10	0.21	0.17	0.15	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.04	0.04	0.01	0.09	0.24	0.35	0.52	0.53	0.45	0
Stdev	0.16	0.14	0.01	0.05	0.19	0.19	0.61	0.38	0.38	0
Prev(%)	16.88	15.58	10.39	23.38	38.96	40.26	40.26	44.16	35.06	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.01	0	0.01	0.06	0.20	0.30	0.36	0.35	0.23	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0.02	0.20	0.71	0.90	1.25	1.01	0.85	0
Stdev	0.07	0.03	0.03	0.15	0.42	0.60	0.73	0.82	0.54	0
Prev(%)	4.73	4.05	11.49	32.43	42.57	47.97	43.24	41.22	40.54	0.70

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0.05	0.14	0.17	0.34	0.33	0.19	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0.10	0.44	0.63	1.24	0.87	0.76	0	0	0	0	0	0	0	0	0
Stdev	0	0	0	0.20	0.37	0.41	0.71	0.77	0.46	0	0	0	0	0	0	0	0	0
Prev(%)	0	0	0	39.04	34.90	50.00	48.21	47.33	39.35	0	0	0	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0.06	0.24	0.31	0.39	0.35	0.21	0	0	0	0.11	0.04	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0.16	0.82	0.89	1.32	1.14	0.74	0	0	0	0.13	0	0	0	0	0
Stdev	0	0	0	0.21	0.46	0.53	0.81	0.67	0.46	0	0	0	0.42	0.25	0	0	0	0
Prev(%)	0	0	0	27.05	51.92	72.32	47.35	49.39	50.12	0	0	0	15.86	6.00	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0	0	0.04	0.03	0.06	0.15	0.17	0.21	0.14	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0.12	0.08	0.09	0.61	0.59	0.50	0.33	0
Stdev	0	0	0.10	0.08	0.20	0.31	0.29	0.51	0.52	0
Prev(%)	14.87	11.77	41.86	51.43	42.86	54.00	60.61	51.61	50.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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