HOMD ::Species:Leptotrichia buccalis

Species: Leptotrichia buccalis (HMT-0563) Primary Body Site: Oral

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia; Leptotrichia buccalis

LINKS: Ecology Home | HMT-0563: [Body Sites Data] [Taxon Description] | Life Page: Leptotrichia buccalis

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Leptotrichia buccalis

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.10	0.20	0.23	0.01	0.04	0	0.02	0.06	0.04	0.02	0	0	0	0	0	0.02	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0.01	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.32	0.52	0.65	0.02	0.05	0	0.04	0.15	0.06	0.04	0.01	0.01	0	0	0	0.06	0	0
Stdev	0.13	0.39	0.38	0.01	0.15	0	0.02	0.11	0.07	0.06	0.01	0	0	0	0	0.07	0	0.01
Prev(%)	33.33	45.32	29.17	0	4.02	0	0	14.29	4.55	6.15	0	0	0	0	0	12.50	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

Notes:
reads equally close to L. buccalis and L. sp. HMT 225 were assigned half to each taxon

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.34	0.64	0.03	0.04	0.01	0.03	0.02	0.02	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	1.13	2.24	0.02	0.10	0.05	0.07	0.04	0.05	0.02	0
Stdev	0.61	1.05	0.15	0.10	0.04	0.06	0.09	0.04	0.01	0
Prev(%)	59.74	61.04	24.68	49.35	28.57	31.17	37.66	42.86	25.97	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.35	0.58	0.01	0.06	0.02	0.05	0.04	0.01	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.92	1.71	0.02	0.19	0.07	0.14	0.07	0.06	0.04	0
Stdev	0.91	1.13	0.09	0.11	0.05	0.12	0.12	0.03	0.02	0
Prev(%)	52.70	54.73	11.49	45.27	24.32	35.13	31.08	27.03	19.59	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.27	0.41	0.02	0.04	0.03	0.05	0.04	0	0	0	0	0.01	0.04	0.01	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.88	1.37	0.01	0.11	0.08	0.14	0.08	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.61	0.96	0.19	0.12	0.07	0.13	0.12	0	0	0	0	0.05	0.34	0.08	0	0	0	0
Prev(%)	47.68	50.33	17.48	36.99	45.64	37.69	35.42	0	0	0	0	3.68	7.47	3.69	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

Notes:
Reads equidistant to HMT-225 and HMT-563 were assigned to each taxon in proportion to the abundance of HMT-225 and HMT-563 individually at this body site (SUBP).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.42	0.55	0.07	0.12	0.03	0.05	0.04	0.02	0.03	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.15	1.73	0.05	0.25	0.08	0.15	0.13	0.06	0.08	0	0	0	0	0	0	0	0	0
Stdev	1.00	1.15	0.44	0.37	0.09	0.14	0.10	0.06	0.06	0	0	0	0	0	0	0	0	0
Prev(%)	59.01	62.68	17.28	42.68	23.27	39.58	34.89	31.87	41.61	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

Notes:
Reads equally close to HMT 225 and 563 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.56	1.39	0.10	0.15	0.10	0.01	0.02	0.02	0.02	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	1.35	4.95	0.02	0.17	0.05	0.02	0.05	0.04	0.03	0
Stdev	1.79	3.17	0.46	0.57	0.44	0.03	0.04	0.06	0.07	0
Prev(%)	68.92	91.18	55.81	71.43	60.71	52.00	69.70	58.06	50.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.09	0.24	0.25	0	0.04	0	0	0	0.01	0.01	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.38	0.69	0.84	0	0.04	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.16	0.55	0.53	0.01	0.25	0	0	0.01	0.07	0.06	0.03	0	0	0	0	0	0	0.01
Prev(%)	41.67	49.24	50.00	5.88	14.10	0	12.50	6.25	8.00	8.69	0.45	0	0	0	0	0	0	0.18

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