HOMD ::Species:Leptotrichia hofstadii

Species: Leptotrichia hofstadii (HMT-0224) Primary Body Site: Oral

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia; Leptotrichia hofstadii

LINKS: Ecology Home | HMT-0224: [Body Sites Data] [Taxon Description] | Life Page: Leptotrichia hofstadii

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Leptotrichia hofstadii

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.12	0.18	0.08	0.02	0.03	0	0.03	0.06	0.04	0.02	0	0	0	0.01	0	0.28	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.01	0	0	0	0	0	0.01	0	0	0	0	0	0	0.01	0	0	0	0
90^thp	0.25	0.47	0.20	0.05	0.04	0	0.07	0.15	0.07	0.04	0.01	0	0	0.01	0	0.66	0	0
Stdev	0.21	0.26	0.10	0.03	0.20	0	0.04	0.12	0.06	0.03	0.01	0	0	0	0	0.78	0	0.01
Prev(%)	37.50	58.73	20.83	0	3.41	0	0	0	9.09	3.55	0	0	0	0	0	12.50	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

Notes:
reads equally close to L. hofstadii and L. sp. HMT 909 were assigned half to each taxon

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.04	0.09	0	0.03	0	0.01	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.10	0.25	0	0.01	0.01	0.02	0	0.01	0	0
Stdev	0.09	0.24	0.02	0.20	0.01	0.02	0.01	0.01	0.01	0
Prev(%)	29.87	40.26	6.49	19.48	14.29	18.18	10.39	15.58	9.09	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to L. hofstadii and L. sp. HMT 909 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.20	0.41	0.01	0.03	0.01	0.03	0.01	0.01	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.56	1.35	0.01	0.08	0.04	0.09	0.03	0.04	0.02	0
Stdev	0.42	0.67	0.09	0.07	0.02	0.05	0.02	0.03	0.03	0
Prev(%)	68.24	72.30	11.49	48.65	28.38	48.65	28.38	34.46	25.68	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

Notes:
Reads equidistant to HMT-224 and HMT-225 were assigned to each taxon in proportion to the abundance of HMT-224 and HMT-225 individually at these sites (SUBP, SUPP).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.17	0.39	0.03	0.10	0	0	0.01	0	0	0	0	0.01	0.01	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.57	1.23	0.04	0.17	0	0	0.03	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.39	0.92	0.16	0.56	0	0	0.06	0	0	0	0.03	0.06	0.10	0	0	0	0	0
Prev(%)	50.99	58.94	20.28	42.47	0	0	18.16	0	0	0	4.02	2.83	4.02	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.29	0.55	0.05	0.12	0.02	0.07	0	0.03	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.83	1.70	0.04	0.28	0.05	0.22	0	0.07	0	0	0	0	0	0	0	0	0	0
Stdev	0.71	1.12	0.37	0.52	0.06	0.15	0	0.11	0	0	0	0	0	0	0	0	0	0
Prev(%)	54.81	63.41	14.57	40.94	21.23	52.98	0	29.68	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.38	1.20	0.04	0.13	0.08	0.01	0.01	0.01	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.72	3.43	0.11	0.37	0.14	0.02	0.03	0.02	0.02	0
Stdev	1.25	2.53	0.09	0.25	0.23	0.01	0.03	0.01	0.01	0
Prev(%)	71.62	82.35	58.14	68.57	75.00	64.00	63.64	48.39	40.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.11	0.22	0.04	0.01	0.05	0	0.01	0	0.01	0	0	0	0	0	0	0.32	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.32	0.63	0.12	0.02	0.03	0	0.04	0	0.01	0	0	0	0	0	0	0	0	0
Stdev	0.25	0.46	0.09	0.04	0.50	0	0.03	0	0.01	0.01	0	0	0	0	0	1.21	0	0
Prev(%)	45.83	54.04	20.83	11.77	13.03	0	37.50	0	12.00	7.98	0	0	0	0	0	7.14	0	0

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