HOMD ::Species:Leptotrichia hongkongensis

Species: Leptotrichia hongkongensis (HMT-0213) Primary Body Site: Oral

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia; Leptotrichia hongkongensis

LINKS: Ecology Home | HMT-0213: [Body Sites Data] [Taxon Description] | Life Page: Leptotrichia hongkongensis

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Leptotrichia hongkongensis

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.28	0.23	0.17	0.03	0.05	0	0.04	0.04	0.03	0.01	0.01	0	0	0.01	0	0.17	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.01	0.01	0	0	0	0	0.01	0.01	0	0	0	0	0	0.01	0	0	0	0
90^thp	0.57	0.56	0.18	0.06	0.10	0	0.10	0.09	0.05	0.04	0.02	0	0	0.01	0	0.40	0.01	0
Stdev	0.65	0.35	0.50	0.06	0.29	0	0.06	0.07	0.03	0.02	0.01	0	0	0	0	0.47	0.01	0.03
Prev(%)	50.00	69.62	20.83	20.00	8.67	0	0	0	4.55	5.20	0	0	0	0	0	12.50	0	0.27

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.26	0.58	0.04	0.12	0.01	0.06	0.01	0.01	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.74	1.57	0.07	0.23	0.04	0.14	0.03	0.03	0.03	0
Stdev	0.46	1.21	0.17	0.42	0.05	0.12	0.05	0.02	0.02	0
Prev(%)	64.94	72.73	23.38	51.95	25.97	44.16	20.78	19.48	20.78	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.38	0.72	0.02	0.10	0.04	0.09	0.03	0.03	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	1.21	1.74	0.04	0.27	0.07	0.25	0.06	0.05	0.04	0
Stdev	0.66	1.53	0.08	0.21	0.19	0.17	0.09	0.07	0.03	0
Prev(%)	66.22	78.38	19.59	56.76	36.49	55.41	25.00	30.41	29.73	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.41	0.78	0.07	0.18	0.04	0.07	0.03	0.02	0	0.01	0.01	0	0.02	0.03	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.03	1.78	0.14	0.35	0.06	0.15	0.03	0.04	0	0	0	0	0	0	0	0	0	0
Stdev	1.07	1.67	0.20	0.58	0.21	0.14	0.27	0.04	0	0.04	0.14	0.03	0.13	0.18	0	0	0	0
Prev(%)	73.51	84.77	34.27	62.33	34.90	50.00	26.19	38.00	0	7.00	6.32	4.25	9.20	6.45	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.56	0.93	0.11	0.25	0.07	0.13	0.08	0.17	0	0	0	0.03	0.05	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.56	2.42	0.22	0.58	0.14	0.35	0.09	0.26	0	0	0	0.01	0.07	0	0	0	0	0
Stdev	1.06	1.65	0.62	0.60	0.29	0.25	0.56	0.73	0	0	0	0.21	0.21	0	0	0	0	0
Prev(%)	76.05	81.71	32.84	64.52	35.29	61.91	30.22	55.47	0	0	0	10.80	16.55	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.57	0.63	0.03	0.15	0.15	0.01	0.05	0.05	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0.02	0	0	0.01	0	0	0	0	0
90^thp	1.16	1.51	0.07	0.46	0.27	0.03	0.13	0.07	0.02	0
Stdev	1.80	1.16	0.05	0.25	0.34	0.02	0.12	0.21	0.03	0
Prev(%)	85.14	97.06	67.44	85.71	92.86	58.00	75.76	58.06	62.50	5.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.45	0.30	0.25	0.04	0.08	0	0.05	0	0	0	0	0	0	0	0	0.16	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.05	0.80	0.23	0.09	0.16	0	0.13	0	0	0	0	0	0	0	0	0	0	0
Stdev	1.26	0.54	0.99	0.12	0.44	0	0.10	0	0	0.01	0	0	0	0	0	0.59	0.01	0.03
Prev(%)	62.50	74.50	45.83	29.41	29.52	0	50.00	0	4.00	9.86	0	0	0	0	0	7.14	1.01	0.36

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