HOMD ::Species:Leptotrichia sp. HMT-218

Species: Leptotrichia sp. HMT-218 (HMT-0218) Primary Body Site: Oral

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia; Leptotrichia sp. HMT-218

LINKS: Ecology Home | HMT-0218: [Body Sites Data] [Taxon Description] | Life Page: Leptotrichia sp. HMT-218

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping ND:Erenv1v3 Eren V3-V5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Species: Leptotrichia sp. HMT-218

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.01	0.02	0.09	0.01	0.02	0.01	0.07	0.25	0.25	0.20	0.01	0	0	0.01	0	0	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0.01	0	0.01	0.01	0.01	0	0	0	0.01	0	0	0	0
90^thp	0.03	0.04	0.08	0.02	0.04	0.01	0.23	0.70	0.64	0.46	0	0	0	0.01	0	0.01	0	0
Stdev	0.01	0.05	0.31	0.01	0.04	0	0.11	0.46	0.47	0.54	0.03	0	0	0	0	0.01	0.01	0.01
Prev(%)	0	4.05	8.33	0	0.93	0	12.50	14.29	22.73	31.21	3.08	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.05	0	0	0.01	0.07	0.07	0.81	0.55	0.28	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0.14	0.17	1.29	0.81	0.33	0
Stdev	0.56	0.01	0.03	0.06	0.31	0.27	2.95	2.49	1.14	0
Prev(%)	2.03	3.38	4.73	8.78	18.24	16.89	21.62	19.59	18.92	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0	0	0	0.06	0.12	0.10	0.50	0.38	0.36	0	0.01	0	0.02	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0.01	0.09	0.15	0.97	0.61	0.18	0	0	0	0	0	0	0	0	0
Stdev	0	0	0	0.40	0.76	0.44	1.96	1.66	1.77	0	0.08	0	0.18	0	0	0	0	0
Prev(%)	0	0	0	10.96	15.44	13.85	22.62	21.33	18.71	0	1.44	0	2.30	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.03	0.02	0	0.04	0.13	0.11	0.60	0.40	0.36	0	0.01	0.05	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0.02	0.19	0.31	1.07	0.87	0.41	0	0	0	0	0	0	0	0	0
Stdev	0.48	0.37	0	0.22	0.54	0.42	2.44	1.67	1.50	0	0.08	0.86	0	0	0	0	0	0
Prev(%)	3.70	3.66	0	10.42	17.39	17.26	22.12	21.17	20.68	0	1.91	2.47	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0	0	0	0	0.02	0.03	0.57	0.36	0.22	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0.02	0.01	0.32	0.76	0.01	0
Stdev	0	0	0	0	0.09	0.20	2.25	1.21	1.19	0
Prev(%)	6.76	2.94	11.63	14.29	17.86	12.00	18.18	16.13	10.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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