HOMD ::Species:Leptotrichia sp. HMT-225

Species: Leptotrichia sp. HMT-225 (HMT-0225) Primary Body Site: Oral

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia; Leptotrichia sp. HMT-225

LINKS: Ecology Home | HMT-0225: [Body Sites Data] [Taxon Description] | Life Page: Leptotrichia sp. HMT-225

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Species: Leptotrichia sp. HMT-225

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.13	0.20	0.06	0.01	0.03	0	0.02	0.05	0.05	0.01	0	0	0	0	0	0.08	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.01	0.01	0	0	0	0	0.01	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.31	0.53	0.12	0.04	0.04	0	0.04	0.12	0.08	0.03	0.01	0.01	0	0	0	0.19	0	0
Stdev	0.24	0.32	0.07	0.02	0.12	0	0.02	0.09	0.13	0.03	0.01	0	0	0	0	0.22	0	0.01
Prev(%)	37.50	60.00	8.33	0	4.02	0	0	0	9.09	4.73	0	0	0	0	0	12.50	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

Notes:
reads equally close to L. buccalis and L. sp. HMT 225 were assigned half to each taxon

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.34	0.64	0.03	0.04	0.01	0.03	0.02	0.02	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	1.13	2.24	0.02	0.10	0.05	0.07	0.04	0.05	0.02	0
Stdev	0.61	1.05	0.15	0.10	0.04	0.06	0.09	0.04	0.01	0
Prev(%)	59.74	61.04	24.68	49.35	28.57	31.17	37.66	42.86	25.97	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.33	0.55	0.01	0.05	0.01	0.02	0.01	0.01	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.81	1.67	0.03	0.05	0.04	0.07	0.03	0.04	0	0
Stdev	0.79	1.34	0.05	0.37	0.04	0.06	0.02	0.04	0.01	0
Prev(%)	45.27	49.32	12.16	25.00	19.59	25.00	13.51	20.27	10.13	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

Notes:
Reads equidistant to HMT-224 and HMT-225 were assigned to each taxon in proportion to the abundance of HMT-224 and HMT-225 individually at these sites (SUBP,SUPP).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.25	0.38	0.03	0.04	0	0	0	0	0	0.01	0.02	0.01	0	0.02	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.49	1.39	0.04	0.09	0	0	0	0	0	0.01	0	0	0	0	0	0	0	0
Stdev	0.73	0.90	0.12	0.17	0	0	0	0	0	0.04	0.16	0.07	0	0.19	0	0	0	0
Prev(%)	53.64	59.60	28.67	43.15	0	0	0	0	0	13.67	5.46	3.97	0	5.99	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

Notes:
Reads equidistant to HMT-225 and HMT-563 were assigned to each taxon in proportion to the abundance of HMT-225 and HMT-563 individually at this body site (SUBP).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.28	0.42	0.04	0.06	0.02	0.03	0.03	0.02	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.65	1.04	0.07	0.10	0.06	0.09	0.04	0.05	0	0	0	0	0	0	0	0	0	0
Stdev	0.89	1.28	0.17	0.32	0.06	0.08	0.19	0.10	0	0	0	0	0	0	0	0	0	0
Prev(%)	52.10	57.56	17.04	26.30	17.65	27.38	17.45	23.36	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

Notes:
Reads equally close to HMT 225 and 563 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.79	1.62	0.05	0.12	0.20	0.02	0.09	0.02	0.02	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	2.16	4.53	0.15	0.27	0.12	0.05	0.09	0.03	0.03	0
Stdev	1.95	3.67	0.09	0.27	0.80	0.04	0.29	0.05	0.04	0.01
Prev(%)	82.43	94.12	74.42	88.57	78.57	56.00	63.64	58.06	60.00	5.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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