HOMD ::Species:Leptotrichia sp. HMT-417

Species: Leptotrichia sp. HMT-417 (HMT-0417) Primary Body Site: Oral

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia; Leptotrichia sp. HMT-417

LINKS: Ecology Home | HMT-0417: [Body Sites Data] [Taxon Description] | Life Page: Leptotrichia sp. HMT-417

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Species: Leptotrichia sp. HMT-417

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.04	0.08	0.20	0.03	0.06	0.04	0.14	2.04	0.84	0.67	0.03	0	0	0	0	0.01	0.01	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0.04	0.02	0.05	0.01	0.01	0	0	0	0	0	0	0	0
90^thp	0.10	0.15	0.26	0.08	0.13	0.04	0.38	5.88	1.59	1.95	0.02	0	0	0	0	0.04	0	0
Stdev	0.06	0.26	0.65	0.03	0.12	0	0.17	3.98	1.53	1.26	0.13	0	0	0	0	0.03	0.04	0.01
Prev(%)	16.67	28.61	20.83	26.67	9.91	100.00	12.50	85.71	50.00	79.91	3.08	0	0	0	0	12.50	0	0.27

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

Notes:
reads equally close to L. wadei and L. sp. HMT 417 were assigned half to each taxon

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.05	0.02	0.01	0.04	0.11	0.07	0.72	0.51	0.35	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.07	0.05	0.01	0.10	0.36	0.16	2.31	1.58	0.91	0
Stdev	0.24	0.09	0.05	0.08	0.23	0.18	1.19	0.85	0.69	0
Prev(%)	35.06	31.17	20.78	44.16	67.53	55.84	87.01	80.52	71.43	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

Notes:
Reads equally close to L. sp. HMT 417 and 463 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.17	0.23	0.07	0.20	0.63	0.44	2.77	2.08	1.54	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0.03	0.01	0	0
90^thp	0.35	0.33	0.10	0.67	2.24	1.45	7.74	6.41	5.61	0
Stdev	0.65	1.11	0.20	0.39	1.23	0.70	4.30	2.80	2.61	0
Prev(%)	39.19	46.62	29.05	61.49	77.03	81.08	92.57	89.86	85.81	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

Notes:
Reads equidistant to HMT-222 and HMT-417 were assigned to each taxon in proportion to the abundance of HMT-222 and HMT-417 individually at these sites (BMU,HPA,PTO,SAL,THR).

Because HMT-222 is not present individually, all equidistant reads were assigned to HMT-417 at this body site (TDO).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.20	0.08	0.09	0.17	0.58	0.32	2.85	2.28	1.75	0.01	0.01	0.01	0.05	0.05	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0.02	0.01	0	0	0	0	0	0	0	0	0	0
90^thp	0.26	0.13	0.11	0.38	1.65	1.11	7.78	6.15	4.54	0.02	0	0	0.05	0.08	0	0	0	0
Stdev	0.92	0.30	0.39	0.39	1.03	0.56	4.36	3.50	3.26	0.06	0.03	0.04	0.25	0.20	0	0	0	0
Prev(%)	45.03	45.03	39.86	64.38	81.88	66.92	91.67	91.33	88.39	13.67	10.06	7.08	12.64	13.82	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

Notes:
Reads equidistant to HMT-417 and HMT-463 were assigned to each taxon in proportion to the abundance of HMT-417 and HMT-463 individually at this body site (PTO).

Reads equidistant to HMT-222 and HMT-417 were assigned to each taxon in proportion to the abundance of HMT-222 and HMT-417 individually at these sites (SAL,SUPP).

Because HMT-463 is not present individually, all equidistant reads were assigned to HMT-417 at this body site (THR).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.17	0.20	0.11	0.37	1.08	0.62	4.13	3.12	2.38	0	0.06	0.07	0.31	0.18	0	0	0	0.01
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0.01	0.02	0.01	0	0	0	0	0	0	0	0	0
90^thp	0.21	0.30	0.23	1.08	3.07	1.82	11.40	9.43	7.63	0	0.04	0.03	0.28	0.35	0	0	0	0
Stdev	0.67	0.98	0.39	0.80	1.97	1.12	6.03	4.44	4.12	0	0.42	0.68	1.65	0.73	0	0	0	0.18
Prev(%)	39.75	51.46	32.10	65.01	78.52	82.44	90.03	90.51	90.51	0	15.92	13.89	27.59	29.33	0	0	0	4.62

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

Notes:
Reads equally close to HMT 222 and 417 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.66	0.23	0.78	0.22	0.30	0.65	2.25	2.13	2.89	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0.01	0.07	0.05	0	0
90^thp	0.34	0.56	2.28	0.55	0.78	1.44	5.00	6.68	12.44	0
Stdev	3.67	0.63	2.04	0.45	0.37	1.63	2.77	2.79	5.70	0
Prev(%)	72.97	82.35	76.74	91.43	89.29	94.00	93.94	96.77	90.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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Body Site Legend: