HOMD ::Species:Leptotrichia sp. HMT-498

Species: Leptotrichia sp. HMT-498 (HMT-0498) Primary Body Site: Oral

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia; Leptotrichia sp. HMT-498

LINKS: Ecology Home | HMT-0498: [Body Sites Data] [Taxon Description] | Life Page: Leptotrichia sp. HMT-498

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Species: Leptotrichia sp. HMT-498

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.03	0.03	0.26	0.01	0.02	0	0.02	0.06	0.04	0.03	0	0	0	0	0	0.01	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.05	0.06	0.35	0.01	0.02	0	0.04	0.18	0.10	0.09	0	0	0	0	0	0.03	0	0
Stdev	0.05	0.12	0.70	0.01	0.24	0	0.02	0.12	0.06	0.06	0.01	0	0	0	0	0.03	0	0
Prev(%)	8.33	9.87	20.83	0	1.55	0	0	0	0	5.67	0	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0	0	0	0.01	0.06	0.08	0.61	0.41	0.20	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0.14	0.01	1.49	0.64	0.27	0
Stdev	0.02	0.01	0.01	0.04	0.22	0.34	2.32	1.84	0.93	0
Prev(%)	5.20	2.60	5.20	7.79	19.48	10.39	23.38	23.38	19.48	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.07	0.15	0	0.01	0	0.01	0	0.01	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.09	0.12	0	0	0	0	0	0	0	0
Stdev	0.44	0.91	0	0.03	0.01	0.03	0.01	0.03	0.01	0
Prev(%)	14.87	15.54	0	6.76	4.05	6.76	5.41	6.08	4.05	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.02	0.02	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.10	0.14	0	0.02	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Prev(%)	9.93	9.93	0	7.53	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.07	0.07	0	0	0	0.01	0	0.01	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.04	0.02	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.39	0.62	0	0	0	0.05	0	0.11	0	0	0	0	0	0	0	0	0	0
Prev(%)	14.57	12.44	0	0	0	5.36	0	7.06	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.03	0.22	0	0.01	0	0	0.01	0.03	0.02	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.05	0.16	0	0.04	0.01	0.01	0.01	0.02	0.01	0
Stdev	0.15	0.81	0.02	0.03	0.01	0.01	0.02	0.13	0.08	0
Prev(%)	27.03	32.35	11.63	28.57	21.43	22.00	24.24	29.03	17.50	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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