HOMD ::Species:Leptotrichia wadei

Species: Leptotrichia wadei (HMT-0222) Primary Body Site: Oral

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia; Leptotrichia wadei

LINKS: Ecology Home | HMT-0222: [Body Sites Data] [Taxon Description] | Life Page: Leptotrichia wadei

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Leptotrichia wadei

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.17	0.14	0.33	0.01	0.05	0.01	0.06	0.24	0.14	0.09	0.01	0	0	0.01	0	0.09	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0	0	0	0	0	0.01	0.01	0.01	0	0	0	0	0	0.01	0	0	0	0
90^thp	0.42	0.33	1.33	0.03	0.08	0.01	0.15	0.68	0.22	0.26	0.01	0.01	0	0.01	0	0.23	0	0
Stdev	0.33	0.32	0.56	0.03	0.24	0	0.09	0.47	0.31	0.16	0.02	0	0	0	0	0.25	0.01	0.01
Prev(%)	45.83	38.48	33.33	13.33	4.95	0	0	14.29	22.73	39.48	1.54	0	0	0	0	12.50	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

Notes:
reads equally close to L. wadei and L. sp. HMT 417 were assigned half to each taxon

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.39	0.29	0.08	0.07	0.10	0.07	0.57	0.40	0.29	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.79	0.89	0.03	0.21	0.38	0.22	2.01	1.23	0.85	0
Stdev	1.33	0.83	0.51	0.15	0.18	0.15	0.88	0.62	0.56	0
Prev(%)	50.65	50.65	23.38	51.95	72.73	57.14	88.31	81.82	76.62	0

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.36	0.46	0.03	0.08	0.09	0.08	0.27	0.23	0.15	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.58	1.35	0.02	0.23	0.21	0.21	0.62	0.73	0.25	0
Stdev	1.45	1.21	0.23	0.18	0.27	0.21	0.76	0.55	0.52	0
Prev(%)	44.59	51.35	12.16	45.27	39.87	40.54	55.41	58.11	50.00	0.70

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

Notes:
Reads equidistant to HMT-222 and HMT-417 were assigned to each taxon in proportion to the abundance of HMT-222 and HMT-417 individually at these sites (BMU,HPA,PTO,SAL,THR).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.37	0.34	0.08	0.07	0.01	0.03	0.02	0.03	0	0	0	0	0.02	0.02	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.03	0.95	0.02	0.19	0.04	0.07	0.04	0.04	0	0	0	0	0	0	0	0	0	0
Stdev	1.22	0.92	0.57	0.20	0.05	0.11	0.12	0.10	0	0	0.03	0.04	0.10	0.13	0	0	0	0
Prev(%)	44.37	47.68	16.08	48.63	28.19	34.62	42.86	50.67	0	0	4.88	3.68	6.32	6.91	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

Notes:
Reads equidistant to HMT-222 and HMT-417 were assigned to each taxon in proportion to the abundance of HMT-222 and HMT-417 individually at these sites (SAL,SUPP).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.48	0.52	0.10	0.18	0.03	0.04	0.03	0.04	0.01	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	1.30	1.42	0.09	0.34	0.07	0.09	0.08	0.08	0.04	0	0	0	0	0	0	0	0	0
Stdev	1.39	1.31	0.54	0.78	0.09	0.13	0.09	0.16	0.04	0	0	0	0	0	0	0	0	0
Prev(%)	52.35	52.93	19.01	45.66	19.95	33.63	28.04	27.74	22.14	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

Notes:
Reads equally close to HMT 222 and 417 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.85	2.56	0.10	0.36	0.17	0.03	0.09	0.05	0.04	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	1.27	8.03	0.20	1.04	0.15	0.06	0.29	0.09	0.08	0
Stdev	2.88	5.32	0.26	0.94	0.66	0.07	0.18	0.15	0.09	0.01
Prev(%)	78.38	91.18	79.07	82.86	85.71	84.00	87.88	58.06	65.00	5.00

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.05	0.10	0.20	0.03	0.10	0.06	0.19	1.87	1.32	1.07	0.01	0	0	0	0	0.01	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0.06	0	0.01	0	0	0	0	0	0	0	0	0	0
90^thp	0.13	0.22	0.24	0.11	0.25	0.06	0.65	4.42	2.54	3.15	0	0	0	0	0	0	0	0
Stdev	0.09	0.43	0.72	0.05	0.26	0	0.29	4.25	2.69	2.05	0.11	0	0	0	0	0.03	0.05	0.02
Prev(%)	50.00	42.93	45.83	52.94	37.50	100.00	62.50	87.50	68.00	86.39	0.90	0	3.13	0	0	7.14	0.51	0.73

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