HOMD ::Species:Neisseria bacilliformis

Species: Neisseria bacilliformis (HMT-0013) Primary Body Site: Oral

Full Lineage: Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria bacilliformis

LINKS: Ecology Home | HMT-0013: [Body Sites Data] [Taxon Description] | Life Page: Neisseria bacilliformis

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping ND:Erenv1v3 Eren V3-V5 HMP V1-V3 HMP V3-V5 HMP Metaphlan Dewhirst 35x9

No Available Datasets for Species: Neisseria bacilliformis

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.17	0.18	0.02	0.01	0.02	0	0.02	0.01	0.01	0.01	0.01	0.02	0	0.03	0	0.01	0	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.01	0.01	0	0	0	0	0.01	0	0	0	0	0	0	0.03	0	0	0	0
90^thp	0.21	0.44	0.03	0.01	0.03	0	0.05	0.03	0.01	0.01	0.01	0	0.01	0.03	0	0.04	0	0
Stdev	0.54	0.47	0.06	0.01	0.05	0	0.02	0.01	0.01	0.01	0.03	0.07	0.01	0	0	0.02	0	0
Prev(%)	29.17	27.85	4.17	0	2.79	0	0	0	0	0.71	1.54	0	0	0	0	0	0	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.06	0.11	0	0.01	0	0	0.01	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.12	0.30	0	0.01	0	0.02	0	0	0	0
Stdev	0.21	0.35	0.02	0.03	0.04	0.01	0.09	0.01	0.01	0
Prev(%)	24.32	25.68	4.73	11.49	2.03	10.81	3.38	4.73	1.35	0

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.08	0.09	0.01	0.01	0	0.01	0.02	0	0	0	0	0	0	0.01	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.20	0.31	0.01	0.03	0	0.02	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.26	0.26	0.08	0.04	0	0.03	0.27	0	0	0.04	0	0	0	0.18	0	0	0	0
Prev(%)	27.82	28.48	13.99	16.44	0	12.31	5.06	0	0	1.67	0	0	0	1.38	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.11	0.14	0	0	0	0	0.02	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.36	0.45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.33	0.37	0	0	0	0	0.17	0	0	0	0	0	0	0	0	0	0	0
Prev(%)	28.39	31.95	0	0	0	0	4.98	0	0	0	0	0	0	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.26	0.08	0	0.03	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.08	0.14	0	0.03	0.01	0.01	0.01	0	0.01	0
Stdev	1.47	0.36	0.02	0.10	0.02	0.01	0.01	0	0.01	0
Prev(%)	24.32	38.23	23.26	40.00	14.29	24.00	21.21	9.68	20.00	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.13	0.15	0.01	0.01	0.01	0	0	0	0	0	0	0	0	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.14	0.37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	0.50	0.53	0.06	0.03	0.05	0	0	0	0	0	0.01	0	0	0	0	0	0	0
Prev(%)	29.17	30.30	4.17	11.77	5.32	0	0	0	0	1.17	0.45	0	0	0	0	0	0	0

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