Species: Neisseria macacae (HMT-0099) Primary Body Site: Environmental
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LINKS: Ecology Home
| HMT-0099: [Body Sites Data]
[Taxon Description]
| Life Page: Neisseria macacae
Hide Legend
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Human Microbiome Project Mapping (Data from healthy subjects. - not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0.79 | 1.03 | 0.12 | 0.16 | 0.45 | 0.11 | 0.41 | 0.08 | 0.09 | 0.07 | 0.02 | 0.02 | 0.04 | 0.36 | 0 | 0.03 | 0.01 | 0.01 |
| n | 24 | 395 | 24 | 15 | 323 | 1 | 8 | 7 | 22 | 423 | 65 | 23 | 30 | 1 | 4 | 8 | 94 | 375 |
| 10thp | 0.04 | 0.04 | 0 | 0 | 0.01 | 0.11 | 0.10 | 0 | 0 | 0.01 | 0 | 0 | 0 | 0.36 | 0 | 0 | 0 | 0 |
| 90thp | 1.88 | 2.54 | 0.20 | 0.51 | 1.18 | 0.11 | 0.72 | 0.16 | 0.22 | 0.18 | 0.07 | 0.05 | 0.02 | 0.36 | 0 | 0.08 | 0 | 0 |
| Stdev | 0.87 | 1.66 | 0.38 | 0.32 | 0.83 | 0 | 0.30 | 0.08 | 0.12 | 0.09 | 0.04 | 0.05 | 0.17 | 0 | 0 | 0.08 | 0.06 | 0.08 |
| Prev(%) | 66.67 | 82.78 | 8.33 | 26.67 | 44.89 | 100.00 | 50.00 | 14.29 | 4.55 | 26.95 | 1.54 | 0 | 3.33 | 0 | 0 | 12.50 | 1.06 | 0.27 |
Eren V1-V3 www.pnas.org
(Data from healthy subjects.)
Notes:
reads equally close to N. flava, N. macacae, N. mucosa, and N. sicca were assigned one fourth to each taxon
reads equally close to N. flava, N. macacae, N. mucosa, and N. sicca were assigned one fourth to each taxon
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
| Avg (%) | 0.61 | 0.79 | 0.12 | 0.29 | 0.14 | 0.20 | 0.04 | 0.03 | 0.01 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 1.70 | 2.06 | 0.20 | 0.78 | 0.22 | 0.35 | 0.11 | 0.05 | 0.03 | 0 |
| Stdev | 1.21 | 1.31 | 0.36 | 0.79 | 0.51 | 0.42 | 0.11 | 0.12 | 0.02 | 0 |
| Prev(%) | 80.52 | 83.12 | 54.55 | 79.22 | 72.73 | 72.73 | 48.05 | 46.75 | 40.26 | 3.90 |
Eren V3-V5 www.pnas.org
(Data from healthy subjects.)
Notes:
Reads equally close to N. flava, N. macacae, N. mucosa, and N. sicca were assigned one-fourth to each taxon.
Reads equally close to N. flava, N. macacae, N. mucosa, and N. sicca were assigned one-fourth to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
| Avg (%) | 0.63 | 1.08 | 0.12 | 0.38 | 0.20 | 0.42 | 0.07 | 0.09 | 0.03 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0.01 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 1.38 | 3.06 | 0.19 | 1.15 | 0.40 | 1.06 | 0.19 | 0.12 | 0.07 | 0 |
| Stdev | 1.15 | 1.51 | 0.33 | 0.79 | 0.56 | 0.58 | 0.14 | 0.31 | 0.05 | 0 |
| Prev(%) | 85.81 | 93.24 | 57.43 | 86.49 | 81.76 | 87.16 | 65.54 | 66.89 | 58.78 | 0 |
Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)
Notes:
Neither HMT-099 nor HMT-682 were present singularly so these reads were split evenly at these sites (ANA,PTO,RRC,TDO).
Some of the reads equidistant from these taxa (099-682-764) are included in HMT-099 because they are too close to differentiate at these sites (ANA,RRC).
Neither HMT-099 nor HMT-682 were present singularly so these reads were split evenly at these sites (ANA,PTO,RRC,TDO).
Some of the reads equidistant from these taxa (099-682-764) are included in HMT-099 because they are too close to differentiate at these sites (ANA,RRC).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
| Avg (%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.03 | 0.01 | 0.01 | 0 | 0.01 | 0 | 0 | 0 | 0 | 0 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.06 | 0.03 | 0 | 0 | 0.01 | 0 | 0 | 0 | 0 | 0 | 0 |
| Stdev | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.12 | 0.03 | 0.06 | 0 | 0.04 | 0 | 0 | 0 | 0 | 0 | 0 |
| Prev(%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 40.00 | 34.84 | 6.00 | 0 | 11.90 | 0 | 0 | 0 | 0 | 0 | 0 |
Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)
No Notes
Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)
Notes:
Reads equally close to HMT 099 and 682 were assigned half to each taxon.
Reads equally close to HMT 099, 609, 682, and 764 were assigned one fourth to each taxon.
Reads equally close to HMT 099 and 682 were assigned half to each taxon.
Reads equally close to HMT 099, 609, 682, and 764 were assigned one fourth to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
| Avg (%) | 0.19 | 0.06 | 0.03 | 0.11 | 0.12 | 0.02 | 0 | 0.01 | 0.01 | 0 |
| n | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN | NaN |
| 10thp | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 90thp | 0.16 | 0.23 | 0.05 | 0.28 | 0.27 | 0.05 | 0.01 | 0.02 | 0.02 | 0 |
| Stdev | 1.28 | 0.14 | 0.07 | 0.27 | 0.36 | 0.07 | 0.01 | 0.03 | 0.02 | 0 |
| Prev(%) | 60.81 | 61.77 | 58.14 | 77.14 | 78.57 | 68.00 | 63.64 | 54.84 | 55.00 | 5.00 |
Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)
No Notes
