HOMD ::Species:Neisseria oralis

Species: Neisseria oralis (HMT-0014) Primary Body Site: Oral

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Full Lineage: Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria oralis

LINKS: Ecology Home | HMT-0014: [Body Sites Data] [Taxon Description] | Life Page: Neisseria oralis

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Available Datasets:
HMP Mapping Eren V1-V3 Eren V3-V5 HMP V1-V3 HMP V3-V5 ND:Metaphlan Dewhirst 35x9

No Available Datasets for Species: Neisseria oralis

Human Microbiome Project Mapping (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.52	0.51	0.14	0.33	0.15	0.04	0.29	0.04	0.05	0.05	0.01	0.03	0.08	0.08	0	0.01	0.01	0
n	24	395	24	15	323	1	8	7	22	423	65	23	30	1	4	8	94	375
10^thp	0.03	0.02	0	0	0.01	0.04	0.04	0	0	0	0	0	0	0.08	0	0	0	0
90^thp	1.36	1.31	0.34	0.22	0.40	0.04	0.69	0.10	0.10	0.12	0.03	0.02	0.01	0.08	0	0.03	0	0
Stdev	1.10	0.97	0.38	1.05	0.26	0	0.38	0.05	0.07	0.06	0.02	0.12	0.41	0	0	0.03	0.13	0.01
Prev(%)	29.17	52.91	8.33	13.33	19.81	0	37.50	0	0	10.87	0	0	3.33	0	0	0	1.06	0

Eren V1-V3 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.66	0.45	0.02	0.21	0.03	0.16	0.05	0.02	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	1.08	1.50	0.01	0.29	0.08	0.43	0.12	0.05	0.01	0
Stdev	3.83	1.25	0.15	0.71	0.09	0.39	0.18	0.09	0.01	0.01
Prev(%)	29.87	38.96	11.69	38.96	22.08	35.06	20.78	22.08	11.69	1.30

Eren V3-V5 www.pnas.org (Data from healthy subjects.)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.17	0.28	0.01	0.11	0.04	0.10	0.04	0.03	0.01	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.38	0.91	0.01	0.36	0.06	0.32	0.04	0.04	0	0
Stdev	0.50	0.77	0.09	0.30	0.32	0.26	0.26	0.11	0.02	0
Prev(%)	31.08	35.81	10.81	37.16	22.97	38.51	18.92	13.51	9.46	2.10

Human Microbiome Project 16S RefSeq (V1-V3) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.51	0.51	0.17	0.18	0.03	0.18	0.02	0.01	0	0	0.03	0.01	0	0.01	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.78	1.07	0.04	0.44	0.08	0.40	0.05	0.04	0.01	0	0	0	0	0	0	0	0	0
Stdev	2.74	1.84	1.35	0.53	0.09	0.63	0.09	0.04	0.01	0.02	0.52	0.11	0.02	0.05	0	0	0	0
Prev(%)	37.09	43.71	20.28	41.10	27.52	32.31	19.64	22.67	14.84	6.00	3.16	3.40	4.02	3.23	0	0	0	0

Human Microbiome Project 16S RefSeq (V3-V5) (Data from healthy subjects. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.46	0.54	0.13	0.34	0.06	0.25	0	0	0	0	0.03	0.07	0.06	0	0	0	0	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
90^thp	0.86	1.30	0.07	1.02	0.19	0.87	0	0	0	0	0	0	0	0	0	0	0	0
Stdev	2.16	1.89	1.04	0.93	0.19	0.70	0	0	0	0	0.51	0.73	0.72	0	0	0	0	0
Prev(%)	38.77	45.85	16.54	39.21	26.60	40.18	0	0	0	0	5.41	4.94	6.90	0	0	0	0	0

Dewhirst 35x9 (35 Taxa by 9 Oral Sites. - not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.43	0.07	0.03	0.09	0.03	0.03	0.01	0.04	0.02	0
n	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN	NaN
10^thp	0	0	0	0	0	0	0	0	0	0
90^thp	0.11	0.25	0.03	0.33	0.07	0.04	0.02	0.02	0.03	0
Stdev	2.83	0.16	0.09	0.21	0.05	0.12	0.01	0.22	0.09	0
Prev(%)	36.49	47.06	37.21	54.29	39.29	38.00	42.42	38.71	32.50	0

Human Microbiome Project Metaphlan (Data from healthy subjects. - not published)

No Notes

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